FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5306, 312 aa
  1>>>pF1KE5306 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9624+/-0.000796; mu= 1.6212+/- 0.048
 mean_var=218.2302+/-43.545, 0's: 0 Z-trim(116.4): 3  B-trim: 65 in 1/54
 Lambda= 0.086819
 statistics sampled from 16976 (16979) to 16976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.522), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS10426.1 RPUSD1 gene_id:113000|Hs108|chr16      ( 312) 2195 286.6 1.7e-77
CCDS81923.1 RPUSD1 gene_id:113000|Hs108|chr16      ( 183) 1327 177.7 5.8e-45
CCDS81924.1 RPUSD1 gene_id:113000|Hs108|chr16      ( 131)  705 99.7 1.3e-21


>>CCDS10426.1 RPUSD1 gene_id:113000|Hs108|chr16           (312 aa)
 initn: 2195 init1: 2195 opt: 2195  Z-score: 1505.0  bits: 286.6 E(32554): 1.7e-77
Smith-Waterman score: 2195; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KE5 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL
              250       260       270       280       290       300

              310  
pF1KE5 QWLSEWTLEPDS
       ::::::::::::
CCDS10 QWLSEWTLEPDS
              310  

>>CCDS81923.1 RPUSD1 gene_id:113000|Hs108|chr16           (183 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 920.7  bits: 177.7 E(32554): 5.8e-45
Smith-Waterman score: 1327; 100.0% identity (100.0% similar) in 183 aa overlap (130-312:1-183)

     100       110       120       130       140       150         
pF1KE5 LALLRGHIQESRVTISHAIGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGD
                                     ::::::::::::::::::::::::::::::
CCDS81                               MCIEGSQGCENPKPSLTDLVVLEHGLYAGD
                                             10        20        30

     160       170       180       190       200       210         
pF1KE5 PVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PVSKVLLKPLTGRTHQLRVHCSALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDT
               40        50        60        70        80        90

     220       230       240       250       260       270         
pF1KE5 ECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 ECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGP
              100       110       120       130       140       150

     280       290       300       310  
pF1KE5 GRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS
       :::::::::::::::::::::::::::::::::
CCDS81 GRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS
              160       170       180   

>>CCDS81924.1 RPUSD1 gene_id:113000|Hs108|chr16           (131 aa)
 initn: 696 init1: 696 opt: 705  Z-score: 501.6  bits: 99.7 E(32554): 1.3e-21
Smith-Waterman score: 705; 92.1% identity (96.5% similar) in 114 aa overlap (1-113:1-114)

               10        20        30        40        50        60
pF1KE5 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KE5 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALL-RGHIQESRVTISHAIG
       ::::::::::::::::::::::::::::::::::::::::::. : . : :...      
CCDS81 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALVVRTQSQASQISWFWNTG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE5 RNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVH
                                                                   
CCDS81 CTQAILSPKCC                                                 
              130                                                  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:40:36 2016 done: Mon Nov  7 23:40:36 2016
 Total Scan time:  2.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]