FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5304, 266 aa
  1>>>pF1KE5304 266 - 266 aa - 266 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9397+/-0.000332; mu= 11.8100+/- 0.021
 mean_var=75.9004+/-14.858, 0's: 0 Z-trim(115.0): 18  B-trim: 0 in 0/55
 Lambda= 0.147215
 statistics sampled from 25200 (25217) to 25200 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.296), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(85289)
NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266) 1732 377.0  2e-104
NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128)  155 41.9 0.00069
NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128)  155 41.9 0.00069
NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153)  145 39.8  0.0035


>>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho  (266 aa)
 initn: 1732 init1: 1732 opt: 1732  Z-score: 1995.9  bits: 377.0 E(85289): 2e-104
Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE5 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
              190       200       210       220       230       240

              250       260      
pF1KE5 VLGPKSVARIAKLEKAKAKELATKLG
       ::::::::::::::::::::::::::
NP_000 VLGPKSVARIAKLEKAKAKELATKLG
              250       260      

>>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap  (128 aa)
 initn: 132 init1: 132 opt: 155  Z-score: 190.8  bits: 41.9 E(85289): 0.00069
Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (136-192:35-91)

         110       120       130       140       150       160     
pF1KE5 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE
                                     :: :.: .:  ..   ....:.: :..:.:
NP_004 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE
           10        20        30        40        50        60    

         170       180       190       200       210       220     
pF1KE5 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN
       ... :: ::.  .::: ....:  :::                                 
NP_004 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE
           70        80        90       100       110       120    

>>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo   (128 aa)
 initn: 132 init1: 132 opt: 155  Z-score: 190.8  bits: 41.9 E(85289): 0.00069
Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (136-192:35-91)

         110       120       130       140       150       160     
pF1KE5 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE
                                     :: :.: .:  ..   ....:.: :..:.:
NP_001 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE
           10        20        30        40        50        60    

         170       180       190       200       210       220     
pF1KE5 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN
       ... :: ::.  .::: ....:  :::                                 
NP_001 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE
           70        80        90       100       110       120    

>>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle  (153 aa)
 initn: 142 init1: 126 opt: 145  Z-score: 178.1  bits: 39.8 E(85289): 0.0035
Smith-Waterman score: 145; 29.1% identity (57.3% similar) in 117 aa overlap (108-224:36-148)

        80        90       100       110       120       130       
pF1KE5 PAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLR
                                     :   .: :.:   :   :. :  :.   .:
NP_060 ADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKA-VKQKQ---IR
          10        20        30        40        50            60 

       140       150       160       170       180       190       
pF1KE5 AGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRK
        ::. :  .:.. .  ..:.: :. :::.   ::..:.  ..::  : .:. ::  .  :
NP_060 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
              70        80        90       100       110       120 

       200       210       220       230       240       250       
pF1KE5 TCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAK
         : : ... . : . :  . .: ...                                 
NP_060 RPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL                            
             130       140       150                               




266 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:39:26 2016 done: Mon Nov  7 23:39:27 2016
 Total Scan time:  4.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]