FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5304, 266 aa
  1>>>pF1KE5304 266 - 266 aa - 266 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5863+/-0.00079; mu= 13.9461+/- 0.047
 mean_var=73.4381+/-14.388, 0's: 0 Z-trim(108.0): 10  B-trim: 0 in 0/51
 Lambda= 0.149663
 statistics sampled from 9947 (9953) to 9947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.306), width:  16
 Scan time:  1.580

The best scores are:                                      opt bits E(32554)
CCDS6965.1 RPL7A gene_id:6130|Hs108|chr9           ( 266) 1732 382.9 1.3e-106


>>CCDS6965.1 RPL7A gene_id:6130|Hs108|chr9                (266 aa)
 initn: 1732 init1: 1732 opt: 1732  Z-score: 2027.7  bits: 382.9 E(32554): 1.3e-106
Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)

               10        20        30        40        50        60
pF1KE5 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
              190       200       210       220       230       240

              250       260      
pF1KE5 VLGPKSVARIAKLEKAKAKELATKLG
       ::::::::::::::::::::::::::
CCDS69 VLGPKSVARIAKLEKAKAKELATKLG
              250       260      




266 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:39:26 2016 done: Mon Nov  7 23:39:26 2016
 Total Scan time:  1.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]