FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5303, 263 aa
  1>>>pF1KE5303 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4334+/-0.000863; mu= 13.3790+/- 0.052
 mean_var=55.8587+/-11.367, 0's: 0 Z-trim(104.6): 21  B-trim: 0 in 0/48
 Lambda= 0.171605
 statistics sampled from 7978 (7983) to 7978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.245), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY         ( 263) 1756 442.9 1.1e-124
CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY       ( 263) 1671 421.8 2.3e-118
CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX          ( 263) 1668 421.1 3.9e-118


>>CCDS14773.1 RPS4Y1 gene_id:6192|Hs108|chrY              (263 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 2352.1  bits: 442.9 E(32554): 1.1e-124
Smith-Waterman score: 1756; 100.0% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTVAEERDKRLATKQSSG
       :::::::::::::::::::::::
CCDS14 GKGIRLTVAEERDKRLATKQSSG
              250       260   

>>CCDS44028.1 RPS4Y2 gene_id:140032|Hs108|chrY            (263 aa)
 initn: 1671 init1: 1671 opt: 1671  Z-score: 2238.3  bits: 421.8 E(32554): 2.3e-118
Smith-Waterman score: 1671; 93.9% identity (98.9% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
       :::::::.:.:::::::::.::::::.::::::::::::::::.::: ::::::::::::
CCDS44 VKKICMQHFLKIDGKVRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
       ::::::::::::.:::::::::::::::::::.:::::::::::::::: .::::::::.
CCDS44 YKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
       ::::.::::::::::::::::::: ::::::::::::::::.::::::::::::::::::
CCDS44 CMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTVAEERDKRLATKQSSG
       :::::::.:::::::::.:::::
CCDS44 GKGIRLTIAEERDKRLAAKQSSG
              250       260   

>>CCDS14418.1 RPS4X gene_id:6191|Hs108|chrX               (263 aa)
 initn: 1668 init1: 1668 opt: 1668  Z-score: 2234.3  bits: 421.1 E(32554): 3.9e-118
Smith-Waterman score: 1668; 92.8% identity (98.1% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KE5 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDE
       :::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
CCDS14 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAK
       :::::::::::::::::.:.::::::::::::.::::.:::.::::::::::::: ::::
CCDS14 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 YKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNL
       ::::::::: ::.:::::::::::::::::::.::::::.:::: :::: .:::::::::
CCDS14 YKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPR
       ::: :::::::.:::::::::::::::::::::::::::::::::::::.::::::::::
CCDS14 CMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPR
              190       200       210       220       230       240

              250       260   
pF1KE5 GKGIRLTVAEERDKRLATKQSSG
       :::::::.:::::::::.:::::
CCDS14 GKGIRLTIAEERDKRLAAKQSSG
              250       260   




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:29:14 2016 done: Tue Nov  8 07:29:15 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]