FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5295, 204 aa
  1>>>pF1KE5295 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6024+/-0.000709; mu= 6.8826+/- 0.043
 mean_var=179.1788+/-35.303, 0's: 0 Z-trim(117.0): 11  B-trim: 135 in 1/52
 Lambda= 0.095814
 statistics sampled from 17656 (17663) to 17656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.543), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS41795.1 PYM1 gene_id:84305|Hs108|chr12         ( 204) 1304 190.8 5.1e-49
CCDS44916.1 PYM1 gene_id:84305|Hs108|chr12         ( 203) 1234 181.1 4.1e-46


>>CCDS41795.1 PYM1 gene_id:84305|Hs108|chr12              (204 aa)
 initn: 1304 init1: 1304 opt: 1304  Z-score: 993.6  bits: 190.8 E(32554): 5.1e-49
Smith-Waterman score: 1304; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MEAAGSPAATETGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEAAGSPAATETGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPELP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQPS
              130       140       150       160       170       180

              190       200    
pF1KE5 KEQLEKLARRRALEEELEDLELGL
       ::::::::::::::::::::::::
CCDS41 KEQLEKLARRRALEEELEDLELGL
              190       200    

>>CCDS44916.1 PYM1 gene_id:84305|Hs108|chr12              (203 aa)
 initn: 1232 init1: 1232 opt: 1234  Z-score: 941.3  bits: 181.1 E(32554): 4.1e-46
Smith-Waterman score: 1234; 96.5% identity (98.0% similar) in 201 aa overlap (6-204:3-203)

               10          20        30        40        50        
pF1KE5 MEAAGSPAATET--GKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPE
            .: .:.   ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44    MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKPE
                  10        20        30        40        50       

       60        70        80        90       100       110        
pF1KE5 LPPGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPPGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSL
        60        70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE5 EETAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EETAQLPSAPQGSRAAPTAASDQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVSQ
       120       130       140       150       160       170       

      180       190       200    
pF1KE5 PSKEQLEKLARRRALEEELEDLELGL
       ::::::::::::::::::::::::::
CCDS44 PSKEQLEKLARRRALEEELEDLELGL
       180       190       200   




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:29:44 2016 done: Mon Nov  7 23:29:45 2016
 Total Scan time:  1.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]