Result of FASTA (omim) for
pFN21AE5292
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5292, 241 aa
1>>>pF1KE5292 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2806+/-0.00039; mu= 15.6069+/- 0.024
mean_var=81.3624+/-16.479, 0's: 0 Z-trim(112.6): 17 B-trim: 671 in 1/53
Lambda= 0.142188
statistics sampled from 21541 (21552) to 21541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.253), width: 16
Scan time: 6.120
The best scores are: opt bits E(85289)
NP_001018125 (OMIM: 189960,227646,613984) Fanconi (1451) 1456 308.8 3.2e-83
NP_001306913 (OMIM: 189960,227646,613984) Fanconi (1451) 1456 308.8 3.2e-83
NP_149075 (OMIM: 189960,227646,613984) Fanconi ane (1471) 1456 308.8 3.3e-83
>>NP_001018125 (OMIM: 189960,227646,613984) Fanconi anem (1451 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1615.0 bits: 308.8 E(85289): 3.2e-83
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS
190 200 210 220 230 240
pF1KE5 K
NP_001 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE
250 260 270 280 290 300
>>NP_001306913 (OMIM: 189960,227646,613984) Fanconi anem (1451 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1615.0 bits: 308.8 E(85289): 3.2e-83
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS
190 200 210 220 230 240
pF1KE5 K
NP_001 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE
250 260 270 280 290 300
>>NP_149075 (OMIM: 189960,227646,613984) Fanconi anemia (1471 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1614.9 bits: 308.8 E(85289): 3.3e-83
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)
10 20 30 40 50 60
pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS
190 200 210 220 230 240
pF1KE5 K
NP_149 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE
250 260 270 280 290 300
241 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:28:09 2016 done: Mon Nov 7 23:28:09 2016
Total Scan time: 6.120 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]