FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5284, 210 aa
  1>>>pF1KE5284 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1320+/-0.000773; mu= 11.3351+/- 0.047
 mean_var=104.1954+/-20.191, 0's: 0 Z-trim(111.6): 17  B-trim: 83 in 1/51
 Lambda= 0.125646
 statistics sampled from 12526 (12532) to 12526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19         ( 210) 1344 253.3 8.2e-68
CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1           ( 187)  716 139.4 1.4e-33
CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182)  682 133.2 9.8e-32
CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11         ( 182)  677 132.3 1.8e-31


>>CCDS42628.1 TNNI3 gene_id:7137|Hs108|chr19              (210 aa)
 initn: 1344 init1: 1344 opt: 1344  Z-score: 1330.9  bits: 253.3 E(32554): 8.2e-68
Smith-Waterman score: 1344; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KE5 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MADGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED
              130       140       150       160       170       180

              190       200       210
pF1KE5 TEKENREVGDWRKNIDALSGMEGRKKKFES
       ::::::::::::::::::::::::::::::
CCDS42 TEKENREVGDWRKNIDALSGMEGRKKKFES
              190       200       210

>>CCDS1411.1 TNNI1 gene_id:7135|Hs108|chr1                (187 aa)
 initn: 718 init1: 594 opt: 716  Z-score: 716.4  bits: 139.4 E(32554): 1.4e-33
Smith-Waterman score: 716; 63.1% identity (82.7% similar) in 179 aa overlap (33-210:2-180)

             10        20        30        40        50        60  
pF1KE5 DGSSDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELE
                                     :....: ::.::::: ::.:.:  ::.  :
CCDS14                              MPEVERKPKITASRKLLLKSLMLAKAKECWE
                                            10        20        30 

             70        80        90       100       110       120  
pF1KE5 REAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNI
       .: :::..:: : :. :   :.  ::... ::::::.:::.:. :::::::::::  .: 
CCDS14 QEHEEREAEKVRYLAERIPTLQTRGLSLSALQDLCRELHAKVEVVDEERYDIEAKCLHNT
              40        50        60        70        80        90 

            130       140       150       160       170       180  
pF1KE5 TEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTE
        :: ::  :..::::::::: :::::.:::::..::::.. : :.::::.::.:::::::
CCDS14 REIKDLKLKVMDLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRANLKSVKKEDTE
             100       110       120       130       140       150 

             190       200       210       
pF1KE5 KENR-EVGDWRKNIDALSGMEGRKKKFES       
       ::   ::::::::..:.:::::::: :..       
CCDS14 KERPVEVGDWRKNVEAMSGMEGRKKMFDAAKSPTSQ
             160       170       180       

>>CCDS53594.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 557 init1: 430 opt: 682  Z-score: 683.2  bits: 133.2 E(32554): 9.8e-32
Smith-Waterman score: 682; 57.6% identity (83.6% similar) in 177 aa overlap (36-210:5-180)

          10        20        30        40        50        60     
pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA
                                     ::...  ..:. .::...::::  :::.: 
CCDS53                           MSQCKKRNRAITARRQHLKSVMLQIAATELEKEE
                                         10        20        30    

          70        80        90       100       110       120     
pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI
        .:..::   :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :.  :.
CCDS53 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL
           40        50         60        70        80        90   

         130       140       150       160       170       180     
pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN
        :..::.:::::::::: :::::.:::::..::::.. :  .::::.:::::::::::: 
CCDS53 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER
           100       110       120       130       140       150   

           190       200       210  
pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES  
         :.::::::::.  :::::::: :::  
CCDS53 DLRDVGDWRKNIEEKSGMEGRKKMFESES
           160       170       180  

>>CCDS31333.1 TNNI2 gene_id:7136|Hs108|chr11              (182 aa)
 initn: 532 init1: 430 opt: 677  Z-score: 678.3  bits: 132.3 E(32554): 1.8e-31
Smith-Waterman score: 677; 57.1% identity (83.6% similar) in 177 aa overlap (36-210:5-180)

          10        20        30        40        50        60     
pF1KE5 SDAAREPRPAPAPIRRRSSNYRAYATEPHAKKKSKISASRKLQLKTLLLQIAKQELEREA
                                     .:...  ..:. .::...::::  :::.: 
CCDS31                           MGDEEKRNRAITARRQHLKSVMLQIAATELEKEE
                                         10        20        30    

          70        80        90       100       110       120     
pF1KE5 EERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEI
        .:..::   :. .: ::.. : ...:.:.::.::::..: ..::.::.:..: :.  :.
CCDS31 SRREAEKQNYLAEHCPPLHIPG-SMSEVQELCKQLHAKIDAAEEEKYDMEVRVQKTSKEL
           40        50         60        70        80        90   

         130       140       150       160       170       180     
pF1KE5 ADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEKEN
        :..::.:::::::::: :::::.:::::..::::.. :  .::::.:::::::::::: 
CCDS31 EDMNQKLFDLRGKFKRPPLRRVRMSADAMLKALLGSKHKVCMDLRANLKQVKKEDTEKER
           100       110       120       130       140       150   

           190       200       210  
pF1KE5 --REVGDWRKNIDALSGMEGRKKKFES  
         :.::::::::.  :::::::: :::  
CCDS31 DLRDVGDWRKNIEEKSGMEGRKKMFESES
           160       170       180  




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:24:47 2016 done: Mon Nov  7 23:24:47 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]