FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5283, 256 aa
  1>>>pF1KE5283 256 - 256 aa - 256 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1573+/-0.000634; mu= 15.9821+/- 0.038
 mean_var=70.5347+/-13.792, 0's: 0 Z-trim(112.1): 11  B-trim: 0 in 0/50
 Lambda= 0.152712
 statistics sampled from 12879 (12881) to 12879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.396), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS5295.1 RNASET2 gene_id:8635|Hs108|chr6         ( 256) 1847 415.3 2.1e-116


>>CCDS5295.1 RNASET2 gene_id:8635|Hs108|chr6              (256 aa)
 initn: 1847 init1: 1847 opt: 1847  Z-score: 2203.4  bits: 415.3 E(32554): 2.1e-116
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE5 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV
              190       200       210       220       230       240

              250      
pF1KE5 CEDGPVFYPPPKKTKH
       ::::::::::::::::
CCDS52 CEDGPVFYPPPKKTKH
              250      




256 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:24:18 2016 done: Mon Nov  7 23:24:19 2016
 Total Scan time:  2.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]