Result of FASTA (ccds) for
pFN21AE5280
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5280, 248 aa
1>>>pF1KE5280 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4758+/-0.000919; mu= 7.7469+/- 0.056
mean_var=263.5957+/-56.139, 0's: 0 Z-trim(114.4): 46 B-trim: 0 in 0/53
Lambda= 0.078996
statistics sampled from 14957 (15000) to 14957 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.461), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 ( 248) 1724 208.8 2.9e-54
CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17 ( 201) 1307 161.1 5.1e-40
CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12 ( 221) 977 123.6 1.1e-28
CCDS13318.1 SRSF6 gene_id:6431|Hs108|chr20 ( 344) 598 80.6 1.5e-15
CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 ( 494) 599 81.0 1.7e-15
CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 ( 272) 593 79.9 1.9e-15
>>CCDS11600.1 SRSF1 gene_id:6426|Hs108|chr17 (248 aa)
initn: 1724 init1: 1724 opt: 1724 Z-score: 1087.7 bits: 208.8 E(32554): 2.9e-54
Smith-Waterman score: 1724; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPR
190 200 210 220 230 240
pF1KE5 HSRSRSRT
::::::::
CCDS11 HSRSRSRT
>>CCDS58580.1 SRSF1 gene_id:6426|Hs108|chr17 (201 aa)
initn: 1303 init1: 1303 opt: 1307 Z-score: 831.9 bits: 161.1 E(32554): 5.1e-40
Smith-Waterman score: 1307; 96.9% identity (98.4% similar) in 192 aa overlap (1-192:1-190)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 RSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPR
:::: ..: :.
CCDS58 RSHE--VGYTRILFFDQNWIQWS
190 200
>>CCDS9199.1 SRSF9 gene_id:8683|Hs108|chr12 (221 aa)
initn: 1019 init1: 549 opt: 977 Z-score: 628.2 bits: 123.6 E(32554): 1.1e-28
Smith-Waterman score: 1004; 66.8% identity (78.8% similar) in 241 aa overlap (1-239:1-217)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::: . :: :..: :::::::: :.: ::.::.::::: ::.:.::::.: :::::.
CCDS91 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR
10 20 30 40 50
70 80 90 100 110
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS
::::::::::.:::.:::: ::::::::. :: :: ::: : :::.:::
CCDS91 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS
60 70 80 90 100
120 130 140 150 160 170
pF1KE5 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK
. ::.:::::::::::::::::::::::::::: .::.:.::..::::: ::.::::.::
CCDS91 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 FRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSPRY-S
::::::::.:::: . :: ::: ::::: ::.:. :: .:::::.: :
CCDS91 FRSHEGETSYIRVYPE--RSTSYGYSRSRSGSRGRD-----------SPYQSRGSPHYFS
170 180 190 200 210
240
pF1KE5 PRHSRSRSRT
:
CCDS91 PFRPY
220
>>CCDS13318.1 SRSF6 gene_id:6431|Hs108|chr20 (344 aa)
initn: 1280 init1: 210 opt: 598 Z-score: 392.7 bits: 80.6 E(32554): 1.5e-15
Smith-Waterman score: 598; 46.9% identity (65.8% similar) in 243 aa overlap (17-248:3-238)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
:.:.: : ..: :::. : :: . ..:::: : :::
CCDS13 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYG-----FVE
10 20 30 40
70 80 90 100 110
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEF---PRSGR-GTGRGGGGGGGGGAPR---GR--
::: :::.:::: .: . : :. :: :: : : . :. .:::: . : ::
CCDS13 FEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDK
50 60 70 80 90 100
120 130 140 150 160
pF1KE5 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT--GVVEFVRKEDMT
:::: : .: :..: .: ::::::: ::.::.: :::.... : ::.:: ::
CCDS13 YGPPVR-TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMK
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE5 YAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPR
:. :::.:.. ... . . ... :: : .::::::: ::::::: .::::: :
CCDS13 RALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSIS
170 180 190 200 210 220
230 240
pF1KE5 RSRGSPRYSPRHSRSRSRT
.::. : : ..:::::.
CCDS13 KSRSRSR-SRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSR
230 240 250 260 270
>>CCDS333.1 SRSF4 gene_id:6429|Hs108|chr1 (494 aa)
initn: 712 init1: 184 opt: 599 Z-score: 391.7 bits: 81.0 E(32554): 1.7e-15
Smith-Waterman score: 599; 46.5% identity (65.1% similar) in 241 aa overlap (17-248:3-232)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
:.:.: : . : .:.: : :: : ..:::: : :::
CCDS33 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVE
10 20 30 40
70 80 90 100 110
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSR
:.: :::.:::: .: : : :. :: :. : : :.: .: : . : .::::.:
CCDS33 FDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE5 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKL
.: :..: .: :::::::.::.::.: :::.. : . ::.::: :: :..::
CCDS33 -TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKL
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 DNTKFRSHEGETAYIRVKVDGP---RSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSR
:.:. ... ::. : : : ::.::::.:::::::: .::::: : . :.
CCDS33 DGTEVNGRK-----IRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSH
170 180 190 200 210
240
pF1KE5 GSPRYSPRH-SRSRSRT
.. : : :::::..
CCDS33 SKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE
220 230 240 250 260 270
>>CCDS32109.1 SRSF5 gene_id:6430|Hs108|chr14 (272 aa)
initn: 304 init1: 238 opt: 593 Z-score: 390.7 bits: 79.9 E(32554): 1.9e-15
Smith-Waterman score: 593; 47.3% identity (67.1% similar) in 243 aa overlap (16-248:4-233)
10 20 30 40 50 60
pF1KE5 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
::...: : : : ::.: : :: ::::::: :: :.:::
CCDS32 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVE
10 20 30 40
70 80 90 100 110
pF1KE5 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGG---GGGAPRG-RYGPP
:::::::.:::: :: . . :. .: :. .:: ::: : . .. ::. : . :
CCDS32 FEDPRDADDAVYELDGKELCSERVTIEHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE5 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVR
:.:::..: .: ::::::: ::.::.: .::..: . :::::. :. :..
CCDS32 PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 KLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRS---YSPRR
::.. .. ... :.. ..: . : .:::::::.:: ::::: ::::: :: :
CCDS32 KLSGKEINGRK-----IKL-IEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR
170 180 190 200 210
240
pF1KE5 SRGSPRYSPRHSRSRSRT
::. : : .::: ::.
CCDS32 SRSRSR-SRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
220 230 240 250 260 270
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:22:33 2016 done: Mon Nov 7 23:22:33 2016
Total Scan time: 1.910 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]