FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5279, 238 aa
  1>>>pF1KE5279 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6401+/-0.000869; mu= 9.7989+/- 0.053
 mean_var=124.4949+/-25.112, 0's: 0 Z-trim(109.8): 17  B-trim: 277 in 1/54
 Lambda= 0.114947
 statistics sampled from 11100 (11115) to 11100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS7565.1 SMNDC1 gene_id:10285|Hs108|chr10        ( 238) 1544 266.6   1e-71


>>CCDS7565.1 SMNDC1 gene_id:10285|Hs108|chr10             (238 aa)
 initn: 1544 init1: 1544 opt: 1544  Z-score: 1400.8  bits: 266.6 E(32554): 1e-71
Smith-Waterman score: 1544; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KE5 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KE5 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
              190       200       210       220       230        




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:21:59 2016 done: Mon Nov  7 23:21:59 2016
 Total Scan time:  2.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]