Result of FASTA (ccds) for
pFN21AE5275
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5275, 217 aa
1>>>pF1KE5275 217 - 217 aa - 217 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4180+/-0.000794; mu= 13.1804+/- 0.048
mean_var=64.6059+/-12.810, 0's: 0 Z-trim(106.6): 20 B-trim: 0 in 0/53
Lambda= 0.159565
statistics sampled from 9066 (9082) to 9066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.279), width: 16
Scan time: 2.070
The best scores are: opt bits E(32554)
CCDS11647.1 GH2 gene_id:2689|Hs108|chr17 ( 217) 1431 337.9 3e-93
CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 ( 217) 1321 312.6 1.3e-85
CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 ( 217) 1135 269.7 9.7e-73
CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 ( 217) 1129 268.4 2.5e-72
CCDS11652.1 CSHL1 gene_id:1444|Hs108|chr17 ( 222) 1040 247.9 3.8e-66
CCDS11648.1 GH2 gene_id:2689|Hs108|chr17 ( 256) 998 238.2 3.5e-63
CCDS45757.1 GH2 gene_id:2689|Hs108|chr17 ( 245) 974 232.7 1.5e-61
CCDS45758.1 GH2 gene_id:2689|Hs108|chr17 ( 202) 972 232.2 1.8e-61
CCDS45760.1 GH1 gene_id:2688|Hs108|chr17 ( 202) 893 214.0 5.4e-56
CCDS11654.1 GH1 gene_id:2688|Hs108|chr17 ( 177) 748 180.6 5.4e-46
CCDS11646.1 CSH2 gene_id:1443|Hs108|chr17 ( 167) 740 178.8 1.8e-45
CCDS45759.1 CSHL1 gene_id:1444|Hs108|chr17 ( 139) 669 162.4 1.3e-40
CCDS82189.1 CSHL1 gene_id:1444|Hs108|chr17 ( 160) 669 162.4 1.5e-40
CCDS42370.1 CSHL1 gene_id:1444|Hs108|chr17 ( 128) 635 154.5 2.7e-38
CCDS42368.1 CSH2 gene_id:1443|Hs108|chr17 ( 122) 411 103.0 8.8e-23
>>CCDS11647.1 GH2 gene_id:2689|Hs108|chr17 (217 aa)
initn: 1431 init1: 1431 opt: 1431 Z-score: 1787.6 bits: 337.9 E(32554): 3e-93
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
130 140 150 160 170 180
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 (217 aa)
initn: 1321 init1: 1321 opt: 1321 Z-score: 1650.8 bits: 312.6 E(32554): 1.3e-85
Smith-Waterman score: 1321; 93.1% identity (97.2% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.:::::::::
CCDS11 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
:: ::::::::::::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS11 YIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
::::::::::::::::: :::::::::::: :::::::::::::.:.::::::.:::::
CCDS11 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
130 140 150 160 170 180
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
190 200 210
>>CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 (217 aa)
initn: 1135 init1: 1135 opt: 1135 Z-score: 1419.4 bits: 269.7 E(32554): 9.7e-73
Smith-Waterman score: 1135; 80.2% identity (93.1% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
:::::::::::::.:::: ::::..: :.:::::::.:::.:.: .::: ::::::::.
CCDS42 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
:: :.::::::.. :::.:::.::::::: .:::::::::::::::::.::::::..::
CCDS42 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
:.:::.::: .:::. :. :::::::::::: :::::: :::::..:.::::::.::: :
CCDS42 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS42 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 (217 aa)
initn: 1129 init1: 1129 opt: 1129 Z-score: 1411.9 bits: 268.4 E(32554): 2.5e-72
Smith-Waterman score: 1129; 79.7% identity (92.6% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
:: ::::::::::.:::: ::::..: :.:::::::.:::.:.: .::: ::::::::.
CCDS11 MAPGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
:: :.::::::.. :::.:::.::::::: .:::::::::::::::::.::::::..::
CCDS11 YIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
:.:::.::: .:::. :. :::::::::::: :::::: :::::..:.::::::.::: :
CCDS11 SMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHD
130 140 150 160 170 180
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::::::::::::::::::::::::.::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210
>>CCDS11652.1 CSHL1 gene_id:1444|Hs108|chr17 (222 aa)
initn: 1048 init1: 788 opt: 1040 Z-score: 1301.0 bits: 247.9 E(32554): 3.8e-66
Smith-Waterman score: 1040; 74.8% identity (87.8% similar) in 222 aa overlap (1-217:1-222)
10 20 30 40 50
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEF---
:::::::::::::.:::: ::::..: :.:::::: .:::.:.: .::: ::::::
CCDS11 MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFKEAMLQAHRAHQLAIDTYQEFISS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 --EEAYILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEP
:::: ::::::::.. :::.:::.:::: :: .::::::::::.::::::.: :::
CCDS11 WGMEAYITKEQKYSFLHDSQTSFCFSDSIPTSSNMEETQQKSNLELLHISLLLIESRLEP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 VQLLRSVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTK
:..:::.:.:.::: .:::. :. ::::::::: :: :::::: ::: ..:.::::::.
CCDS11 VRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSHLTGQTLKQTYSKFDTN
130 140 150 160 170 180
180 190 200 210
pF1KE5 SHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
::: ::::::::::.::::::::::::::.::::::::::::
CCDS11 SHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF
190 200 210 220
>>CCDS11648.1 GH2 gene_id:2689|Hs108|chr17 (256 aa)
initn: 983 init1: 983 opt: 998 Z-score: 1247.8 bits: 238.2 E(32554): 3.5e-63
Smith-Waterman score: 998; 95.7% identity (96.3% similar) in 163 aa overlap (1-162:1-163)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMW-RLEDGSPRTGQIFNQSYSKFDTKSHND
:::::::::::::::::::::::::::::::: :. : : :
CCDS11 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWVRVAPGIPNPGAPLASRDWGEKHCCPLF
130 140 150 160 170 180
180 190 200 210
pF1KE5 DALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
CCDS11 SSQALTQENSPYSSFPLVNPPGLSLQPGGEGGKWMNERGREQCPSAWPLLLFLHFAEAGR
190 200 210 220 230 240
>>CCDS45757.1 GH2 gene_id:2689|Hs108|chr17 (245 aa)
initn: 982 init1: 963 opt: 974 Z-score: 1218.3 bits: 232.7 E(32554): 1.5e-61
Smith-Waterman score: 974; 93.3% identity (97.0% similar) in 164 aa overlap (1-163:1-162)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLM-WRLEDGSPRTGQIFNQSYSKFDTKSHND
::::::::::::::::::::::::::::::. :.. ..: :.
CCDS45 SVFANSLVYGASDSNVYRHLKDLEEGIQTLIGWKM--AAPGLGRSSISPTASLTQNRTTM
130 140 150 160 170
180 190 200 210
pF1KE5 DALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
CCDS45 THCSRTTGCSTASGRTWTRSRHSCASCSAALWRAAVASSCPGGIPVTPPQCLSWSWKVLL
180 190 200 210 220 230
>>CCDS45758.1 GH2 gene_id:2689|Hs108|chr17 (202 aa)
initn: 1324 init1: 965 opt: 972 Z-score: 1217.1 bits: 232.2 E(32554): 1.8e-61
Smith-Waterman score: 1298; 93.1% identity (93.1% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ------------NPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
60 70 80 90 100
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
110 120 130 140 150 160
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
>>CCDS45760.1 GH1 gene_id:2688|Hs108|chr17 (202 aa)
initn: 1223 init1: 892 opt: 893 Z-score: 1118.8 bits: 214.0 E(32554): 5.4e-56
Smith-Waterman score: 1197; 86.6% identity (90.8% similar) in 217 aa overlap (1-217:1-202)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.::::::
CCDS45 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
:::::::::::::::::: .:::::::::::::::::::::::::.::
CCDS45 ------------NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLR
60 70 80 90 100
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
::::::::::::::::: :::::::::::: :::::::::::::.:.::::::.:::::
CCDS45 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
110 120 130 140 150 160
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS45 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
170 180 190 200
>>CCDS11654.1 GH1 gene_id:2688|Hs108|chr17 (177 aa)
initn: 748 init1: 748 opt: 748 Z-score: 939.3 bits: 180.6 E(32554): 5.4e-46
Smith-Waterman score: 994; 76.0% identity (79.7% similar) in 217 aa overlap (1-217:1-177)
10 20 30 40 50 60
pF1KE5 MAAGSRTSLLLAFGLLCLSWLQEGSAFPTIPLSRLFDNAMLRARRLYQLAYDTYQEFEEA
::.::::::::::::::: ::::::::::::::::::::::::.::.:::.::::::
CCDS11 MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEF---
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 YILKEQKYSFLQNPQTSLCFSESIPTPSNRVKTQQKSNLELLRISLLLIQSWLEPVQLLR
::::::::::::::::::::.::
CCDS11 -------------------------------------NLELLRISLLLIQSWLEPVQFLR
60 70 80
130 140 150 160 170 180
pF1KE5 SVFANSLVYGASDSNVYRHLKDLEEGIQTLMWRLEDGSPRTGQIFNQSYSKFDTKSHNDD
::::::::::::::::: :::::::::::: :::::::::::::.:.::::::.:::::
CCDS11 SVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDD
90 100 110 120 130 140
190 200 210
pF1KE5 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
:::::::::::::::::::::::::::::::::::::
CCDS11 ALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF
150 160 170
217 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:26:39 2016 done: Tue Nov 8 07:26:39 2016
Total Scan time: 2.070 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]