FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5271, 218 aa
  1>>>pF1KE5271 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2834+/- 0.001; mu= 13.7853+/- 0.060
 mean_var=62.5583+/-12.617, 0's: 0 Z-trim(103.5): 21  B-trim: 0 in 0/52
 Lambda= 0.162155
 statistics sampled from 7451 (7454) to 7451 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.229), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS12517.1 EIF3K gene_id:27335|Hs108|chr19        ( 218) 1450 347.8   3e-96
CCDS74360.1 EIF3K gene_id:27335|Hs108|chr19        ( 192)  928 225.7 1.6e-59
CCDS77293.1 EIF3K gene_id:27335|Hs108|chr19        ( 131)  889 216.5 6.3e-57


>>CCDS12517.1 EIF3K gene_id:27335|Hs108|chr19             (218 aa)
 initn: 1450 init1: 1450 opt: 1450  Z-score: 1841.4  bits: 347.8 E(32554): 3e-96
Smith-Waterman score: 1450; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
              130       140       150       160       170       180

              190       200       210        
pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       ::::::::::::::::::::::::::::::::::::::
CCDS12 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
              190       200       210        

>>CCDS74360.1 EIF3K gene_id:27335|Hs108|chr19             (192 aa)
 initn: 1249 init1: 928 opt: 928  Z-score: 1182.2  bits: 225.7 E(32554): 1.6e-59
Smith-Waterman score: 1201; 87.6% identity (88.1% similar) in 218 aa overlap (1-218:1-192)

               10        20        30        40        50        60
pF1KE5 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS
       ::::::::::::::::::::.                          :::::::::::::
CCDS74 LDENMDLLEGITGFEDSVRKY--------------------------SQLKVWMSKYGWS
              130       140                                 150    

              190       200       210        
pF1KE5 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       ::::::::::::::::::::::::::::::::::::::
CCDS74 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
          160       170       180       190  

>>CCDS77293.1 EIF3K gene_id:27335|Hs108|chr19             (131 aa)
 initn: 889 init1: 889 opt: 889  Z-score: 1135.5  bits: 216.5 E(32554): 6.3e-57
Smith-Waterman score: 889; 100.0% identity (100.0% similar) in 131 aa overlap (88-218:1-131)

        60        70        80        90       100       110       
pF1KE5 PAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAF
                                     ::::::::::::::::::::::::::::::
CCDS77                               MIDQAHQEERPIRQILYLGDLLETCHFQAF
                                             10        20        30

       120       130       140       150       160       170       
pF1KE5 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 WQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY
               40        50        60        70        80        90

       180       190       200       210        
pF1KE5 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS77 GWSADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ
              100       110       120       130 




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:18:32 2016 done: Mon Nov  7 23:18:32 2016
 Total Scan time:  1.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]