Result of FASTA (ccds) for
pFN21AE5263
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5263, 172 aa
1>>>pF1KE5263 172 - 172 aa - 172 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3179+/-0.000532; mu= 18.3219+/- 0.032
mean_var=54.4626+/-10.905, 0's: 0 Z-trim(112.7): 6 B-trim: 0 in 0/51
Lambda= 0.173790
statistics sampled from 13382 (13387) to 13382 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.411), width: 16
Scan time: 1.560
The best scores are: opt bits E(32554)
CCDS6974.1 CACFD1 gene_id:11094|Hs108|chr9 ( 172) 1151 295.4 1.2e-80
CCDS56591.1 CACFD1 gene_id:11094|Hs108|chr9 ( 233) 977 251.9 2e-67
CCDS48051.1 CACFD1 gene_id:11094|Hs108|chr9 ( 130) 470 124.5 2.4e-29
CCDS56592.1 CACFD1 gene_id:11094|Hs108|chr9 ( 191) 467 123.9 5.3e-29
>>CCDS6974.1 CACFD1 gene_id:11094|Hs108|chr9 (172 aa)
initn: 1151 init1: 1151 opt: 1151 Z-score: 1561.6 bits: 295.4 E(32554): 1.2e-80
Smith-Waterman score: 1151; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
130 140 150 160 170
>>CCDS56591.1 CACFD1 gene_id:11094|Hs108|chr9 (233 aa)
initn: 971 init1: 971 opt: 977 Z-score: 1324.1 bits: 251.9 E(32554): 2e-67
Smith-Waterman score: 977; 93.1% identity (96.2% similar) in 159 aa overlap (1-157:1-158)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::::::::::::. .: :.: :. :.
CCDS56 TLLGNAIAFATGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGE
130 140 150 160 170
CCDS56 IRMPAGAMRSPMPGSSSRGSRRMRRSSRRPWRGSCEGLGAPPSLSPLLALCGSK
180 190 200 210 220 230
>>CCDS48051.1 CACFD1 gene_id:11094|Hs108|chr9 (130 aa)
initn: 478 init1: 466 opt: 470 Z-score: 640.5 bits: 124.5 E(32554): 2.4e-29
Smith-Waterman score: 754; 75.0% identity (75.6% similar) in 172 aa overlap (1-172:1-130)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::.: ::::::::::::
CCDS48 GVWMMM------------------------------------------AVVPIVISLTLT
70
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TLLGNAIAFATGVLYGLSALGKKGDAISYARIQQQRQQADEEKLAETLEGEL
80 90 100 110 120 130
>>CCDS56592.1 CACFD1 gene_id:11094|Hs108|chr9 (191 aa)
initn: 466 init1: 466 opt: 467 Z-score: 634.2 bits: 123.9 E(32554): 5.3e-29
Smith-Waterman score: 580; 66.0% identity (69.8% similar) in 159 aa overlap (1-157:1-116)
10 20 30 40 50 60
pF1KE5 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSSSGGAPGASASSAPPAQEEGMTWWYRWLCRLSGVLGAVSCAISGLFNCITIHPLNIAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GVWMIMNAFILLLCEAPFCCQFIEFANTVAEKVDRLRSWQKAVFYCGMAVVPIVISLTLT
::::.: ::::::::::::
CCDS56 GVWMMM------------------------------------------AVVPIVISLTLT
70
130 140 150 160 170
pF1KE5 TLLGNAIAFATGVLYGLSALGKKG--DAISYARIQQQRQQADEEKLAETLEGEL
:::::::::::::::::::::::. .: :.: :. :.
CCDS56 TLLGNAIAFATGVLYGLSALGKKAQTEAGSFA-AQHPREPGPFSEGTRQAFATPAVVSGE
80 90 100 110 120 130
CCDS56 IRMPAGAMRSPMPGSSSRGSRRMRRSSRRPWRGSCEGLGAPPSLSPLLALCGSK
140 150 160 170 180 190
172 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:25:36 2016 done: Tue Nov 8 07:25:36 2016
Total Scan time: 1.560 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]