FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5262, 179 aa
  1>>>pF1KE5262 179 - 179 aa - 179 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1889+/-0.000667; mu= 13.4884+/- 0.040
 mean_var=61.6499+/-12.519, 0's: 0 Z-trim(109.8): 17  B-trim: 0 in 0/50
 Lambda= 0.163346
 statistics sampled from 11159 (11173) to 11159 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS5329.1 NUDT1 gene_id:4521|Hs108|chr7           ( 179) 1254 303.3 5.1e-83
CCDS5330.1 NUDT1 gene_id:4521|Hs108|chr7           ( 156) 1086 263.7 3.7e-71


>>CCDS5329.1 NUDT1 gene_id:4521|Hs108|chr7                (179 aa)
 initn: 1254 init1: 1254 opt: 1254  Z-score: 1604.0  bits: 303.3 E(32554): 5.1e-83
Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV
              130       140       150       160       170         

>>CCDS5330.1 NUDT1 gene_id:4521|Hs108|chr7                (156 aa)
 initn: 1086 init1: 1086 opt: 1086  Z-score: 1390.9  bits: 263.7 E(32554): 3.7e-71
Smith-Waterman score: 1086; 100.0% identity (100.0% similar) in 156 aa overlap (24-179:1-156)

               10        20        30        40        50        60
pF1KE5 MSGISPQQMGEPEGSWSGKNPGTMGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG
                              :::::::::::::::::::::::::::::::::::::
CCDS53                        MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGG
                                      10        20        30       

               70        80        90       100       110       120
pF1KE5 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVE
        40        50        60        70        80        90       

              130       140       150       160       170         
pF1KE5 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVDTV
       100       110       120       130       140       150      




179 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:59:16 2016 done: Mon Nov  7 22:59:16 2016
 Total Scan time:  1.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]