FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5255, 173 aa
  1>>>pF1KE5255 173 - 173 aa - 173 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0502+/-0.000308; mu= 14.2064+/- 0.019
 mean_var=65.5957+/-13.209, 0's: 0 Z-trim(117.1): 16  B-trim: 221 in 1/54
 Lambda= 0.158357
 statistics sampled from 28768 (28783) to 28768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.337), width:  16
 Scan time:  4.590

The best scores are:                                      opt bits E(85289)
NP_006393 (OMIM: 608521) ragulator complex protein ( 173) 1164 274.0 8.4e-74


>>NP_006393 (OMIM: 608521) ragulator complex protein LAM  (173 aa)
 initn: 1164 init1: 1164 opt: 1164  Z-score: 1446.0  bits: 274.0 E(85289): 8.4e-74
Smith-Waterman score: 1164; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)

               10        20        30        40        50        60
pF1KE5 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEPGAGHLDGHRAGSPSLRQALCDGSAVMFSSKERGRCTVINFVPLEAPLRSTPRSRQVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EACGGEGRAVPLGSEPEWSVGGMEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS
               70        80        90       100       110       120

              130       140       150       160       170   
pF1KE5 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DEHAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQKHDGITVAVHKMAS
              130       140       150       160       170   




173 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:24:25 2016 done: Tue Nov  8 07:24:25 2016
 Total Scan time:  4.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]