Result of FASTA (omim) for
pFN21AE5248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5248, 204 aa
1>>>pF1KE5248 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6535+/-0.000392; mu= 8.9272+/- 0.024
mean_var=140.0252+/-27.332, 0's: 0 Z-trim(116.1): 4 B-trim: 305 in 1/56
Lambda= 0.108385
statistics sampled from 26940 (26944) to 26940 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.316), width: 16
Scan time: 6.060
The best scores are: opt bits E(85289)
NP_079351 (OMIM: 611965) THO complex subunit 7 hom ( 204) 1326 218.3 7.1e-57
NP_001272316 (OMIM: 611965) THO complex subunit 7 ( 152) 975 163.3 1.9e-40
XP_006713402 (OMIM: 611965) PREDICTED: THO complex ( 152) 975 163.3 1.9e-40
NP_001272333 (OMIM: 611965) THO complex subunit 7 ( 152) 975 163.3 1.9e-40
>>NP_079351 (OMIM: 611965) THO complex subunit 7 homolog (204 aa)
initn: 1326 init1: 1326 opt: 1326 Z-score: 1142.1 bits: 218.3 E(85289): 7.1e-57
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KE5 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 EFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQT
130 140 150 160 170 180
190 200
pF1KE5 LENDEKLSEVEEAQEASMETDPKP
::::::::::::::::::::::::
NP_079 LENDEKLSEVEEAQEASMETDPKP
190 200
>>NP_001272316 (OMIM: 611965) THO complex subunit 7 homo (152 aa)
initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)
30 40 50 60 70 80
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
::::::::::::::::::::::::::::::
NP_001 MLSTLSQCEFSMGKTLLVYDMNLREMENYE
10 20 30
90 100 110 120 130 140
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
100 110 120 130 140 150
pF1KE5 KP
::
NP_001 KP
>>XP_006713402 (OMIM: 611965) PREDICTED: THO complex sub (152 aa)
initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)
30 40 50 60 70 80
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
::::::::::::::::::::::::::::::
XP_006 MLSTLSQCEFSMGKTLLVYDMNLREMENYE
10 20 30
90 100 110 120 130 140
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
100 110 120 130 140 150
pF1KE5 KP
::
XP_006 KP
>>NP_001272333 (OMIM: 611965) THO complex subunit 7 homo (152 aa)
initn: 975 init1: 975 opt: 975 Z-score: 847.1 bits: 163.3 E(85289): 1.9e-40
Smith-Waterman score: 975; 100.0% identity (100.0% similar) in 152 aa overlap (53-204:1-152)
30 40 50 60 70 80
pF1KE5 DDRRINLLVKSFIKWCNSGSQEEGYSQYQRMLSTLSQCEFSMGKTLLVYDMNLREMENYE
::::::::::::::::::::::::::::::
NP_001 MLSTLSQCEFSMGKTLLVYDMNLREMENYE
10 20 30
90 100 110 120 130 140
pF1KE5 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIYKEIECSIAGAHEKIAECKKQILQAKRIRKNRQEYDALAKVIQHHPDRHETLKELEAL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE5 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKELEHLSHIKESVEDKLELRRKQFHVLLSTIHELQQTLENDEKLSEVEEAQEASMETDP
100 110 120 130 140 150
pF1KE5 KP
::
NP_001 KP
204 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:51:50 2016 done: Mon Nov 7 22:51:51 2016
Total Scan time: 6.060 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]