FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5240, 251 aa 1>>>pF1KE5240 251 - 251 aa - 251 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9367+/-0.00105; mu= 7.5093+/- 0.062 mean_var=168.2674+/-34.875, 0's: 0 Z-trim(109.4): 103 B-trim: 632 in 1/50 Lambda= 0.098872 statistics sampled from 10730 (10836) to 10730 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.333), width: 16 Scan time: 1.590 The best scores are: opt bits E(32554) CCDS45005.1 SNRNP35 gene_id:11066|Hs108|chr12 ( 251) 1744 260.6 7.3e-70 CCDS9249.1 SNRNP35 gene_id:11066|Hs108|chr12 ( 246) 1709 255.6 2.3e-68 CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19 ( 437) 520 86.2 3.9e-17 CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19 ( 428) 500 83.4 2.8e-16 >>CCDS45005.1 SNRNP35 gene_id:11066|Hs108|chr12 (251 aa) initn: 1744 init1: 1744 opt: 1744 Z-score: 1367.7 bits: 260.6 E(32554): 7.3e-70 Smith-Waterman score: 1744; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251) 10 20 30 40 50 60 pF1KE5 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 190 200 210 220 230 240 250 pF1KE5 IKGREKKERGK ::::::::::: CCDS45 IKGREKKERGK 250 >>CCDS9249.1 SNRNP35 gene_id:11066|Hs108|chr12 (246 aa) initn: 1709 init1: 1709 opt: 1709 Z-score: 1340.8 bits: 255.6 E(32554): 2.3e-68 Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 246 aa overlap (6-251:1-246) 10 20 30 40 50 60 pF1KE5 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 180 190 200 210 220 230 250 pF1KE5 IKGREKKERGK ::::::::::: CCDS92 IKGREKKERGK 240 >>CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19 (437 aa) initn: 699 init1: 358 opt: 520 Z-score: 421.1 bits: 86.2 E(32554): 3.9e-17 Smith-Waterman score: 520; 43.7% identity (70.4% similar) in 206 aa overlap (52-249:99-303) 30 40 50 60 70 80 pF1KE5 GSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGD :: . ::::::.: .: :.::.. : :: CCDS12 RKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE5 IRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWI :.:...: . .: .:::::::..:: . .::. ::: :: ....:: : ::.::: CCDS12 IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWR 130 140 150 160 170 180 150 160 170 180 190 pF1KE5 PRRLGGGLGGKKESG---QLRFGGRDRPFR---KPINLPVVKNDLYREGKRERRERSRSR :::::::::: ...: ..: .::: : .: :. . : :. .:::::::: : CCDS12 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRER 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE5 ERHWDSRTRDRDHDRGREKRWQEREPTRVWPD--NDWERERDFRDDRIKGREKKERGK ... . : :.:..:: :..: ...: : . .: .:.: :..: . : ..:: CCDS12 DKERERR-RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKE 250 260 270 280 290 300 CCDS12 ELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRD 310 320 330 340 350 360 >>CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19 (428 aa) initn: 392 init1: 392 opt: 500 Z-score: 405.8 bits: 83.4 E(32554): 2.8e-16 Smith-Waterman score: 500; 43.3% identity (69.5% similar) in 203 aa overlap (52-249:99-294) 30 40 50 60 70 80 pF1KE5 GSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGD :: . ::::::.: .: :.::.. : :: CCDS74 RKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE5 IRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWI :.:...: . .: .:::::::..:: . .::. ::: :: ....:: : ::.::: CCDS74 IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWR 130 140 150 160 170 180 150 160 170 180 190 pF1KE5 PRRLGGGLGGKKESG---QLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERH :::::::::: ...: ..: .::: : . : :. .:::::::: :... CCDS74 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYD------ERDRDRDRERERRERSRERDKE 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE5 WDSRTRDRDHDRGREKRWQEREPTRVWPD--NDWERERDFRDDRIKGREKKERGK . : :.:..:: :..: ...: : . .: .:.: :..: . : ..:: CCDS74 RERR-RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELR 250 260 270 280 290 300 CCDS74 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDR 310 320 330 340 350 360 251 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:48:29 2016 done: Mon Nov 7 22:48:29 2016 Total Scan time: 1.590 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]