FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5240, 251 aa
  1>>>pF1KE5240 251 - 251 aa - 251 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9367+/-0.00105; mu= 7.5093+/- 0.062
 mean_var=168.2674+/-34.875, 0's: 0 Z-trim(109.4): 103  B-trim: 632 in 1/50
 Lambda= 0.098872
 statistics sampled from 10730 (10836) to 10730 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS45005.1 SNRNP35 gene_id:11066|Hs108|chr12      ( 251) 1744 260.6 7.3e-70
CCDS9249.1 SNRNP35 gene_id:11066|Hs108|chr12       ( 246) 1709 255.6 2.3e-68
CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19       ( 437)  520 86.2 3.9e-17
CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19       ( 428)  500 83.4 2.8e-16


>>CCDS45005.1 SNRNP35 gene_id:11066|Hs108|chr12           (251 aa)
 initn: 1744 init1: 1744 opt: 1744  Z-score: 1367.7  bits: 260.6 E(32554): 7.3e-70
Smith-Waterman score: 1744; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)

               10        20        30        40        50        60
pF1KE5 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
              190       200       210       220       230       240

              250 
pF1KE5 IKGREKKERGK
       :::::::::::
CCDS45 IKGREKKERGK
              250 

>>CCDS9249.1 SNRNP35 gene_id:11066|Hs108|chr12            (246 aa)
 initn: 1709 init1: 1709 opt: 1709  Z-score: 1340.8  bits: 255.6 E(32554): 2.3e-68
Smith-Waterman score: 1709; 100.0% identity (100.0% similar) in 246 aa overlap (6-251:1-246)

               10        20        30        40        50        60
pF1KE5 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92      MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE5 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KE5 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KE5 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
         180       190       200       210       220       230     

              250 
pF1KE5 IKGREKKERGK
       :::::::::::
CCDS92 IKGREKKERGK
         240      

>>CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19            (437 aa)
 initn: 699 init1: 358 opt: 520  Z-score: 421.1  bits: 86.2 E(32554): 3.9e-17
Smith-Waterman score: 520; 43.7% identity (70.4% similar) in 206 aa overlap (52-249:99-303)

              30        40        50        60        70        80 
pF1KE5 GSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGD
                                     :: . ::::::.: .: :.::.. :  :: 
CCDS12 RKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP
       70        80        90       100       110       120        

              90       100       110       120       130       140 
pF1KE5 IRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWI
       :.:...: .  .:  .:::::::..:: . .::. :::  :: ....:: :  ::.::: 
CCDS12 IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWR
      130       140       150       160       170       180        

             150          160          170       180       190     
pF1KE5 PRRLGGGLGGKKESG---QLRFGGRDRPFR---KPINLPVVKNDLYREGKRERRERSRSR
       :::::::::: ...:   ..: .:::   :   .:   :. . :  :. .:::::::: :
CCDS12 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRER
      190       200       210       220       230       240        

         200       210       220         230       240       250   
pF1KE5 ERHWDSRTRDRDHDRGREKRWQEREPTRVWPD--NDWERERDFRDDRIKGREKKERGK  
       ... . : :.:..:: :..: ...:  :   .  .: .:.:  :..: . : ..::    
CCDS12 DKERERR-RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKE
      250        260       270       280       290       300       

CCDS12 ELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRD
       310       320       330       340       350       360       

>>CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19            (428 aa)
 initn: 392 init1: 392 opt: 500  Z-score: 405.8  bits: 83.4 E(32554): 2.8e-16
Smith-Waterman score: 500; 43.3% identity (69.5% similar) in 203 aa overlap (52-249:99-294)

              30        40        50        60        70        80 
pF1KE5 GSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGD
                                     :: . ::::::.: .: :.::.. :  :: 
CCDS74 RKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGP
       70        80        90       100       110       120        

              90       100       110       120       130       140 
pF1KE5 IRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVDYELERTLKGWI
       :.:...: .  .:  .:::::::..:: . .::. :::  :: ....:: :  ::.::: 
CCDS74 IKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWR
      130       140       150       160       170       180        

             150          160       170       180       190        
pF1KE5 PRRLGGGLGGKKESG---QLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERH
       :::::::::: ...:   ..: .:::   :        . :  :. .:::::::: :...
CCDS74 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYD------ERDRDRDRERERRERSRERDKE
      190       200       210       220             230       240  

      200       210       220         230       240       250      
pF1KE5 WDSRTRDRDHDRGREKRWQEREPTRVWPD--NDWERERDFRDDRIKGREKKERGK     
        . : :.:..:: :..: ...:  :   .  .: .:.:  :..: . : ..::       
CCDS74 RERR-RSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELR
             250       260       270       280       290       300 

CCDS74 GGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDR
             310       320       330       340       350       360 




251 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:48:29 2016 done: Mon Nov  7 22:48:29 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]