FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5235, 196 aa
  1>>>pF1KE5235 196 - 196 aa - 196 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3200+/-0.000411; mu= 4.7125+/- 0.026
 mean_var=139.5459+/-27.408, 0's: 0 Z-trim(115.8): 7  B-trim: 251 in 1/53
 Lambda= 0.108571
 statistics sampled from 26429 (26434) to 26429 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.31), width:  16
 Scan time:  5.350

The best scores are:                                      opt bits E(85289)
NP_000972 (OMIM: 180466) 60S ribosomal protein L19 ( 196) 1259 208.2 7.1e-54
NP_001317129 (OMIM: 180466) 60S ribosomal protein  ( 194) 1247 206.3 2.6e-53


>>NP_000972 (OMIM: 180466) 60S ribosomal protein L19 iso  (196 aa)
 initn: 1259 init1: 1259 opt: 1259  Z-score: 1088.2  bits: 208.2 E(85289): 7.1e-54
Smith-Waterman score: 1259; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
              130       140       150       160       170       180

              190      
pF1KE5 KEEIIKTLSKEEETKK
       ::::::::::::::::
NP_000 KEEIIKTLSKEEETKK
              190      

>>NP_001317129 (OMIM: 180466) 60S ribosomal protein L19   (194 aa)
 initn: 1247 init1: 1247 opt: 1247  Z-score: 1078.1  bits: 206.3 E(85289): 2.6e-53
Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 194 aa overlap (3-196:1-194)

               10        20        30        40        50        60
pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001   MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK
      120       130       140       150       160       170        

              190      
pF1KE5 KEEIIKTLSKEEETKK
       ::::::::::::::::
NP_001 KEEIIKTLSKEEETKK
      180       190    




196 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:45:54 2016 done: Mon Nov  7 22:45:54 2016
 Total Scan time:  5.350 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]