FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5233, 198 aa
  1>>>pF1KE5233 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5679+/-0.000299; mu= 13.2244+/- 0.019
 mean_var=78.9553+/-15.647, 0's: 0 Z-trim(117.9): 4  B-trim: 825 in 1/52
 Lambda= 0.144339
 statistics sampled from 30321 (30322) to 30321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.356), width:  16
 Scan time:  5.940

The best scores are:                                      opt bits E(85289)
NP_003668 (OMIM: 604550) density-regulated protein ( 198) 1334 286.5 1.9e-77


>>NP_003668 (OMIM: 604550) density-regulated protein [Ho  (198 aa)
 initn: 1334 init1: 1334 opt: 1334  Z-score: 1511.3  bits: 286.5 E(85289): 1.9e-77
Smith-Waterman score: 1334; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE5 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE
              130       140       150       160       170       180

              190        
pF1KE5 KWPEVDDDSIEDLGEVKK
       ::::::::::::::::::
NP_003 KWPEVDDDSIEDLGEVKK
              190        




198 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:44:32 2016 done: Mon Nov  7 22:44:32 2016
 Total Scan time:  5.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]