FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5233, 198 aa
  1>>>pF1KE5233 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5619+/-0.000697; mu= 13.2703+/- 0.042
 mean_var=81.2378+/-15.925, 0's: 0 Z-trim(110.8): 5  B-trim: 537 in 1/52
 Lambda= 0.142297
 statistics sampled from 11916 (11918) to 11916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS45003.1 DENR gene_id:8562|Hs108|chr12          ( 198) 1334 282.6 1.1e-76


>>CCDS45003.1 DENR gene_id:8562|Hs108|chr12               (198 aa)
 initn: 1334 init1: 1334 opt: 1334  Z-score: 1490.5  bits: 282.6 E(32554): 1.1e-76
Smith-Waterman score: 1334; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KE5 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAADISESSGADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTVPQKVTIAKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE
              130       140       150       160       170       180

              190        
pF1KE5 KWPEVDDDSIEDLGEVKK
       ::::::::::::::::::
CCDS45 KWPEVDDDSIEDLGEVKK
              190        




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:44:31 2016 done: Mon Nov  7 22:44:31 2016
 Total Scan time:  2.100 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]