Result of FASTA (omim) for
pFN21AE5227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5227, 194 aa
1>>>pF1KE5227 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8942+/-0.000296; mu= 15.7220+/- 0.018
mean_var=67.4203+/-13.476, 0's: 0 Z-trim(117.9): 17 B-trim: 254 in 1/54
Lambda= 0.156199
statistics sampled from 30216 (30233) to 30216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.354), width: 16
Scan time: 5.590
The best scores are: opt bits E(85289)
NP_258412 (OMIM: 147520,613850,616647) inosine tri ( 194) 1330 307.9 6.6e-84
NP_852470 (OMIM: 147520,613850,616647) inosine tri ( 177) 1201 278.8 3.5e-75
XP_006723627 (OMIM: 147520,613850,616647) PREDICTE ( 238) 937 219.4 3.6e-57
XP_011527536 (OMIM: 147520,613850,616647) PREDICTE ( 147) 932 218.1 5.4e-57
NP_001254552 (OMIM: 147520,613850,616647) inosine ( 153) 926 216.8 1.4e-56
NP_001311169 (OMIM: 147520,613850,616647) inosine ( 138) 922 215.8 2.4e-56
XP_006723628 (OMIM: 147520,613850,616647) PREDICTE ( 197) 533 128.3 7.8e-30
>>NP_258412 (OMIM: 147520,613850,616647) inosine triphos (194 aa)
initn: 1330 init1: 1330 opt: 1330 Z-score: 1627.3 bits: 307.9 E(85289): 6.6e-84
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
130 140 150 160 170 180
190
pF1KE5 ALLELQEYFGSLAA
::::::::::::::
NP_258 ALLELQEYFGSLAA
190
>>NP_852470 (OMIM: 147520,613850,616647) inosine triphos (177 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 1470.8 bits: 278.8 E(85289): 3.5e-75
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (23-194:6-177)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
::::::::::::::::::::::::::::::::::::::
NP_852 MAASLVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
10 20 30 40
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_852 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
110 120 130 140 150 160
190
pF1KE5 ALLELQEYFGSLAA
::::::::::::::
NP_852 ALLELQEYFGSLAA
170
>>XP_006723627 (OMIM: 147520,613850,616647) PREDICTED: i (238 aa)
initn: 926 init1: 926 opt: 937 Z-score: 1147.5 bits: 219.4 E(85289): 3.6e-57
Smith-Waterman score: 937; 89.3% identity (91.8% similar) in 159 aa overlap (1-153:1-159)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 STGDPSQPVRLFRGRTSGR------IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNA
::::::::::::::::: : .. ::. .: :
XP_006 STGDPSQPVRLFRGRTSERCHSSRHLACPRSSGAGSWHPEAARTLAGTPAFSLMDMSRRT
130 140 150 160 170 180
180 190
pF1KE5 VSHRFRALLELQEYFGSLAA
XP_006 QRCLRRRRTLSPIASGPCWSCRSTLAVWQLDFCSWRRPLRPGIWGGLAQNLPHRAGTP
190 200 210 220 230
>>XP_011527536 (OMIM: 147520,613850,616647) PREDICTED: i (147 aa)
initn: 930 init1: 930 opt: 932 Z-score: 1144.3 bits: 218.1 E(85289): 5.4e-57
Smith-Waterman score: 932; 96.6% identity (97.9% similar) in 145 aa overlap (1-143:1-145)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
70 80 90 100 110 120
130 140 150 160 170
pF1KE5 STGDPSQPVRLFRGRTSGR--IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHR
:::::::::::::::::: ..::
XP_011 STGDPSQPVRLFRGRTSGNSWLTAPEA
130 140
>>NP_001254552 (OMIM: 147520,613850,616647) inosine trip (153 aa)
initn: 926 init1: 926 opt: 926 Z-score: 1136.7 bits: 216.8 E(85289): 1.4e-56
Smith-Waterman score: 960; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
:::::::::::::::::::::::
NP_001 MAASLVGKKIVFVTGNAKKLEEV-------------------------------------
10 20
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
30 40 50 60 70
130 140 150 160 170 180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
80 90 100 110 120 130
190
pF1KE5 ALLELQEYFGSLAA
::::::::::::::
NP_001 ALLELQEYFGSLAA
140 150
>>NP_001311169 (OMIM: 147520,613850,616647) inosine trip (138 aa)
initn: 922 init1: 922 opt: 922 Z-score: 1132.5 bits: 215.8 E(85289): 2.4e-56
Smith-Waterman score: 922; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
:::::::::::::::::
NP_001 STGDPSQPVRLFRGRTSF
130
>>XP_006723628 (OMIM: 147520,613850,616647) PREDICTED: i (197 aa)
initn: 654 init1: 519 opt: 533 Z-score: 656.6 bits: 128.3 E(85289): 7.8e-30
Smith-Waterman score: 567; 63.5% identity (66.0% similar) in 159 aa overlap (1-153:1-118)
10 20 30 40 50 60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
:::::::::::::::::::::::
XP_006 MAASLVGKKIVFVTGNAKKLEEV-------------------------------------
10 20
70 80 90 100 110 120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
30 40 50 60 70
130 140 150 160 170
pF1KE5 STGDPSQPVRLFRGRTSGR------IVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNA
::::::::::::::::: : .. ::. .: :
XP_006 STGDPSQPVRLFRGRTSERCHSSRHLACPRSSGAGSWHPEAARTLAGTPAFSLMDMSRRT
80 90 100 110 120 130
180 190
pF1KE5 VSHRFRALLELQEYFGSLAA
XP_006 QRCLRRRRTLSPIASGPCWSCRSTLAVWQLDFCSWRRPLRPGIWGGLAQNLPHRAGTP
140 150 160 170 180 190
194 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:41:44 2016 done: Mon Nov 7 22:41:44 2016
Total Scan time: 5.590 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]