FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5227, 194 aa
  1>>>pF1KE5227 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1111+/-0.000672; mu= 14.5154+/- 0.040
 mean_var=65.8807+/-13.342, 0's: 0 Z-trim(111.0): 9  B-trim: 350 in 1/50
 Lambda= 0.158014
 statistics sampled from 12064 (12071) to 12064 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.371), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS13051.1 ITPA gene_id:3704|Hs108|chr20          ( 194) 1330 311.2 2.5e-85
CCDS46576.1 ITPA gene_id:3704|Hs108|chr20          ( 177) 1201 281.8 1.7e-76
CCDS58762.1 ITPA gene_id:3704|Hs108|chr20          ( 153)  926 219.0 1.1e-57


>>CCDS13051.1 ITPA gene_id:3704|Hs108|chr20               (194 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1645.3  bits: 311.2 E(32554): 2.5e-85
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
              130       140       150       160       170       180

              190    
pF1KE5 ALLELQEYFGSLAA
       ::::::::::::::
CCDS13 ALLELQEYFGSLAA
              190    

>>CCDS46576.1 ITPA gene_id:3704|Hs108|chr20               (177 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 1486.9  bits: 281.8 E(32554): 1.7e-76
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (23-194:6-177)

               10        20        30        40        50        60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
                             ::::::::::::::::::::::::::::::::::::::
CCDS46                  MAASLVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
                                10        20        30        40   

               70        80        90       100       110       120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
            50        60        70        80        90       100   

              130       140       150       160       170       180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
           110       120       130       140       150       160   

              190    
pF1KE5 ALLELQEYFGSLAA
       ::::::::::::::
CCDS46 ALLELQEYFGSLAA
           170       

>>CCDS58762.1 ITPA gene_id:3704|Hs108|chr20               (153 aa)
 initn: 926 init1: 926 opt: 926  Z-score: 1149.0  bits: 219.0 E(32554): 1.1e-57
Smith-Waterman score: 960; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153)

               10        20        30        40        50        60
pF1KE5 MAASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCQEA
       :::::::::::::::::::::::                                     
CCDS58 MAASLVGKKIVFVTGNAKKLEEV-------------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE5 VRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----QGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTFAL
                30        40        50        60        70         

              130       140       150       160       170       180
pF1KE5 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 STGDPSQPVRLFRGRTSGRIVAPRGCQDFGWDPCFQPDGYEQTYAEMPKAEKNAVSHRFR
      80        90       100       110       120       130         

              190    
pF1KE5 ALLELQEYFGSLAA
       ::::::::::::::
CCDS58 ALLELQEYFGSLAA
     140       150   




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:41:43 2016 done: Mon Nov  7 22:41:43 2016
 Total Scan time:  1.960 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]