FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5226, 176 aa
  1>>>pF1KE5226 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4221+/-0.000766; mu= 11.3790+/- 0.046
 mean_var=58.0582+/-11.782, 0's: 0 Z-trim(107.1): 13  B-trim: 50 in 1/49
 Lambda= 0.168323
 statistics sampled from 9386 (9389) to 9386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS1915.1 MCEE gene_id:84693|Hs108|chr2           ( 176) 1131 282.6 8.4e-77


>>CCDS1915.1 MCEE gene_id:84693|Hs108|chr2                (176 aa)
 initn: 1131 init1: 1131 opt: 1131  Z-score: 1492.3  bits: 282.6 E(32554): 8.4e-77
Smith-Waterman score: 1131; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE5 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 MARVLKAAAANAVGLFSRLQAPIPTVRASSTSQPLDQVTGSVWNLGRLNHVAIAVPDLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGLDSPIAGFLQKNKAGGM
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS19 AAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTKMELLHPLGRDSPIAGFLQKNKAGGM
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE5 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS19 HHICIEVDNINAAVMDLKKKKIRSLSEEVKIGAHGKPVIFLHPKDCGGVLVELEQA
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:41:11 2016 done: Mon Nov  7 22:41:11 2016
 Total Scan time:  1.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]