FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5221, 259 aa
  1>>>pF1KE5221 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5547+/-0.000827; mu= 12.5362+/- 0.049
 mean_var=57.5308+/-11.628, 0's: 0 Z-trim(106.2): 21  B-trim: 41 in 1/48
 Lambda= 0.169092
 statistics sampled from 8844 (8850) to 8844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS3870.1 SRD5A1 gene_id:6715|Hs108|chr5          ( 259) 1813 450.4 5.5e-127
CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2         ( 254)  806 204.8 4.9e-53


>>CCDS3870.1 SRD5A1 gene_id:6715|Hs108|chr5               (259 aa)
 initn: 1813 init1: 1813 opt: 1813  Z-score: 2393.2  bits: 450.4 E(32554): 5.5e-127
Smith-Waterman score: 1813; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE5 MATATGVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRHALPSHRLRVPARAAWVVQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MATATGVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRHALPSHRLRVPARAAWVVQE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IMFCTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IMFCTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 TGYKIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 TGYKIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWY
              190       200       210       220       230       240

              250         
pF1KE5 LRKFEEYPKFRKIIIPFLF
       :::::::::::::::::::
CCDS38 LRKFEEYPKFRKIIIPFLF
              250         

>>CCDS74503.1 SRD5A2 gene_id:6716|Hs108|chr2              (254 aa)
 initn: 772 init1: 608 opt: 806  Z-score: 1065.7  bits: 204.8 E(32554): 4.9e-53
Smith-Waterman score: 806; 52.7% identity (74.3% similar) in 226 aa overlap (36-259:31-254)

          10        20        30        40          50        60   
pF1KE5 GVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRH--ALPSHRLRVPARAAWVVQELPS
                                     : ::.:  .:     :.:::::: .:::::
CCDS74 MQVQCQQSPVLAGSATLVALGALALYVAKPSGYGKHTESLKPAATRLPARAAWFLQELPS
               10        20        30        40        50        60

            70        80        90       100       110       120   
pF1KE5 LALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRCLIYPFLMRGGKPMPLLACTMAIMF
       .:.:    : .    : . :. .::..: .:: :: ..: .: :: .:.: .    .  :
CCDS74 FAVPAGILARQPLS-LFGPPGTVLLGLFCLHYFHRTFVYSLLNRG-RPYPAILILRGTAF
               70         80        90       100        110        

           130       140       150       160       170       180   
pF1KE5 CTCNGYLQSRYLSHCAVYADDWVTDPRFLIGFGLWLTGMLINIHSDHILRNLRKPGDTGY
       :: :: ::. :: .:: : : : :: :: .:  :.. :: ::::::.:::.:::::. .:
CCDS74 CTGNGVLQGYYLIYCAEYPDGWYTDIRFSLGVFLFILGMGINIHSDYILRQLRKPGEISY
      120       130       140       150       160       170        

           190       200       210       220       230       240   
pF1KE5 KIPRGGLFEYVTAANYFGEIMEWCGYALASWSVQGAAFAFFTFCFLSGRAKEHHEWYLRK
       .::.:::: ::..::..:::.:: :::::.::. . :::::..:::. :: .::..::. 
CCDS74 RIPQGGLFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFSLCFLGLRAFHHHRFYLKM
      180       190       200       210       220       230        

           250         
pF1KE5 FEEYPKFRKIIIPFLF
       ::.::: :: .:::.:
CCDS74 FEDYPKSRKALIPFIF
      240       250    




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:38:23 2016 done: Mon Nov  7 22:38:23 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]