FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5217, 204 aa
  1>>>pF1KE5217 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1017+/-0.000385; mu= 13.8255+/- 0.024
 mean_var=53.7242+/-11.111, 0's: 0 Z-trim(110.7): 20  B-trim: 0 in 0/50
 Lambda= 0.174980
 statistics sampled from 19063 (19064) to 19063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.224), width:  16
 Scan time:  5.070

The best scores are:                                      opt bits E(85289)
NP_001000 (OMIM: 603630) 40S ribosomal protein S5  ( 204) 1322 341.7 4.8e-94


>>NP_001000 (OMIM: 603630) 40S ribosomal protein S5 [Hom  (204 aa)
 initn: 1322 init1: 1322 opt: 1322  Z-score: 1809.4  bits: 341.7 E(85289): 4.8e-94
Smith-Waterman score: 1322; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
              130       140       150       160       170       180

              190       200    
pF1KE5 AKGSSNSYAIKKKDELERVAKSNR
       ::::::::::::::::::::::::
NP_001 AKGSSNSYAIKKKDELERVAKSNR
              190       200    




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:36:07 2016 done: Mon Nov  7 22:36:07 2016
 Total Scan time:  5.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]