FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5217, 204 aa
  1>>>pF1KE5217 204 - 204 aa - 204 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5692+/-0.00088; mu= 10.7950+/- 0.053
 mean_var=51.7861+/-10.543, 0's: 0 Z-trim(104.0): 17  B-trim: 0 in 0/46
 Lambda= 0.178225
 statistics sampled from 7681 (7683) to 7681 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.236), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS12978.1 RPS5 gene_id:6193|Hs108|chr19          ( 204) 1322 347.8 2.7e-96


>>CCDS12978.1 RPS5 gene_id:6193|Hs108|chr19               (204 aa)
 initn: 1322 init1: 1322 opt: 1322  Z-score: 1842.2  bits: 347.8 E(32554): 2.7e-96
Smith-Waterman score: 1322; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE5 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
              130       140       150       160       170       180

              190       200    
pF1KE5 AKGSSNSYAIKKKDELERVAKSNR
       ::::::::::::::::::::::::
CCDS12 AKGSSNSYAIKKKDELERVAKSNR
              190       200    




204 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:36:06 2016 done: Mon Nov  7 22:36:06 2016
 Total Scan time:  1.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]