FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5216, 199 aa
  1>>>pF1KE5216 199 - 199 aa - 199 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3717+/-0.000678; mu= 6.6756+/- 0.041
 mean_var=149.9104+/-29.599, 0's: 0 Z-trim(116.4): 2  B-trim: 0 in 0/53
 Lambda= 0.104751
 statistics sampled from 17054 (17056) to 17054 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.524), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS8104.1 SSSCA1 gene_id:10534|Hs108|chr11        ( 199) 1341 212.8 1.1e-55
CCDS76434.1 SSSCA1 gene_id:10534|Hs108|chr11       ( 162) 1097 175.8 1.2e-44


>>CCDS8104.1 SSSCA1 gene_id:10534|Hs108|chr11             (199 aa)
 initn: 1341 init1: 1341 opt: 1341  Z-score: 1113.0  bits: 212.8 E(32554): 1.1e-55
Smith-Waterman score: 1341; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KE5 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RPEHCEGAAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQL
              130       140       150       160       170       180

              190         
pF1KE5 CGLIRACAEALRSLQQLQH
       :::::::::::::::::::
CCDS81 CGLIRACAEALRSLQQLQH
              190         

>>CCDS76434.1 SSSCA1 gene_id:10534|Hs108|chr11            (162 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 914.9  bits: 175.8 E(32554): 1.2e-44
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 162 aa overlap (38-199:1-162)

        10        20        30        40        50        60       
pF1KE5 VDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRK
                                     ::::::::::::::::::::::::::::::
CCDS76                               MGDYLLRGYRMLGETCADCGTILLQDKQRK
                                             10        20        30

        70        80        90       100       110       120       
pF1KE5 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASELPLGSRPAPQPPVPRPEHCEG
               40        50        60        70        80        90

       130       140       150       160       170       180       
pF1KE5 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AAAGLKAAQGPPAPAVPPNTDVMACTQTALLQKLTWASAELGSSTSLETSIQLCGLIRAC
              100       110       120       130       140       150

       190         
pF1KE5 AEALRSLQQLQH
       ::::::::::::
CCDS76 AEALRSLQQLQH
              160  




199 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:35:26 2016 done: Mon Nov  7 22:35:27 2016
 Total Scan time:  2.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]