FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5208, 244 aa
  1>>>pF1KE5208 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1015+/-0.000855; mu= 10.5493+/- 0.051
 mean_var=77.1203+/-15.254, 0's: 0 Z-trim(107.4): 25  B-trim: 0 in 0/49
 Lambda= 0.146046
 statistics sampled from 9541 (9564) to 9541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS12488.1 TBCB gene_id:1155|Hs108|chr19          ( 244) 1610 348.4 2.6e-96
CCDS74344.1 TBCB gene_id:1155|Hs108|chr19          ( 193) 1294 281.8 2.3e-76


>>CCDS12488.1 TBCB gene_id:1155|Hs108|chr19               (244 aa)
 initn: 1610 init1: 1610 opt: 1610  Z-score: 1842.7  bits: 348.4 E(32554): 2.6e-96
Smith-Waterman score: 1610; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE5 MEVTGVSAPTVTVFISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEVTGVSAPTVTVFISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYG
              190       200       210       220       230       240

           
pF1KE5 LDEI
       ::::
CCDS12 LDEI
           

>>CCDS74344.1 TBCB gene_id:1155|Hs108|chr19               (193 aa)
 initn: 1294 init1: 1294 opt: 1294  Z-score: 1484.5  bits: 281.8 E(32554): 2.3e-76
Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 193 aa overlap (52-244:1-193)

              30        40        50        60        70        80 
pF1KE5 FRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDD
                                     ::::::::::::::::::::::::::::::
CCDS74                               MELELYGVDDKFYSKLDQEDALLGSYPVDD
                                             10        20        30

              90       100       110       120       130       140 
pF1KE5 GCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQ
               40        50        60        70        80        90

             150       160       170       180       190       200 
pF1KE5 EAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEPL
              100       110       120       130       140       150

             210       220       230       240    
pF1KE5 GKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYGLDEI
       :::::::::::::::::::::::::::::::::::::::::::
CCDS74 GKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDYGLDEI
              160       170       180       190   




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:31:15 2016 done: Mon Nov  7 22:31:15 2016
 Total Scan time:  1.760 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]