FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5207, 178 aa
  1>>>pF1KE5207 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2838+/-0.000765; mu= -0.1587+/- 0.046
 mean_var=149.5087+/-29.469, 0's: 0 Z-trim(114.0): 26  B-trim: 24 in 1/52
 Lambda= 0.104892
 statistics sampled from 14527 (14549) to 14527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.447), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS12447.1 FXYD5 gene_id:53827|Hs108|chr19        ( 178) 1185 189.8 7.6e-49
CCDS82328.1 FXYD5 gene_id:53827|Hs108|chr19        ( 194) 1075 173.2 8.4e-44


>>CCDS12447.1 FXYD5 gene_id:53827|Hs108|chr19             (178 aa)
 initn: 1185 init1: 1185 opt: 1185  Z-score: 990.4  bits: 189.8 E(32554): 7.6e-49
Smith-Waterman score: 1185; 99.4% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS12 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNRCR
              130       140       150       160       170        

>>CCDS82328.1 FXYD5 gene_id:53827|Hs108|chr19             (194 aa)
 initn: 1075 init1: 1075 opt: 1075  Z-score: 899.9  bits: 173.2 E(32554): 8.4e-44
Smith-Waterman score: 1075; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE5 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSPSGRLCLLTIVGLILPTRGQTLKDTTSSSSADSTIMDIQVPTRAPDAVYTELQPTSPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PTWPADETPQPQTQTQQLEGTDGPLVTDPETHKSTKAAHPTDDTTTLSERPSPSTDVQTD
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSGKCRQLSRLCRNHCR  
       :::::::::::::::::::::::::::::::::::::::::::                 
CCDS82 PQTLKPSGFHEDDPFFYDEHTLRKRGLLVAAVLFITGIIILTSENWGWVGRTPRPGGGLM
              130       140       150       160       170       180

CCDS82 TEGWVLKGPWAILF
              190    




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:30:44 2016 done: Mon Nov  7 22:30:44 2016
 Total Scan time:  1.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]