Result of FASTA (omim) for
pFN21AE5204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5204, 208 aa
1>>>pF1KE5204 208 - 208 aa - 208 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9811+/-0.000332; mu= -5.9616+/- 0.021
mean_var=297.4661+/-58.682, 0's: 0 Z-trim(124.9): 16 B-trim: 2 in 1/61
Lambda= 0.074363
statistics sampled from 47351 (47369) to 47351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.555), width: 16
Scan time: 7.680
The best scores are: opt bits E(85289)
NP_001263236 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42
NP_001263238 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42
NP_003937 (OMIM: 605235,614937) nucleolar protein ( 208) 1460 168.6 6.3e-42
NP_001263241 (OMIM: 605235,614937) nucleolar prote ( 208) 1460 168.6 6.3e-42
XP_016879332 (OMIM: 605235,614937) PREDICTED: nucl ( 270) 1460 168.7 7.7e-42
NP_001263248 (OMIM: 605235,614937) nucleolar prote ( 270) 1460 168.7 7.7e-42
NP_001171986 (OMIM: 605235,614937) nucleolar prote ( 219) 651 81.9 8.8e-16
XP_005256274 (OMIM: 605235,614937) PREDICTED: nucl ( 281) 651 82.0 1.1e-15
XP_011521726 (OMIM: 605235,614937) PREDICTED: nucl ( 295) 651 82.0 1.1e-15
NP_001263240 (OMIM: 605235,614937) nucleolar prote ( 181) 360 50.6 1.9e-06
XP_005256276 (OMIM: 605235,614937) PREDICTED: nucl ( 243) 360 50.7 2.4e-06
>>NP_001263236 (OMIM: 605235,614937) nucleolar protein 3 (208 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
130 140 150 160 170 180
190 200
pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::
NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS
190 200
>>NP_001263238 (OMIM: 605235,614937) nucleolar protein 3 (208 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
130 140 150 160 170 180
190 200
pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::
NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS
190 200
>>NP_003937 (OMIM: 605235,614937) nucleolar protein 3 is (208 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
130 140 150 160 170 180
190 200
pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::
NP_003 AEPEPELEPEPDPEPEPDFEERDESEDS
190 200
>>NP_001263241 (OMIM: 605235,614937) nucleolar protein 3 (208 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 873.7 bits: 168.6 E(85289): 6.3e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
130 140 150 160 170 180
190 200
pF1KE5 AEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::
NP_001 AEPEPELEPEPDPEPEPDFEERDESEDS
190 200
>>XP_016879332 (OMIM: 605235,614937) PREDICTED: nucleola (270 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 872.2 bits: 168.7 E(85289): 7.7e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:63-270)
10 20 30
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL
::::::::::::::::::::::::::::::
XP_016 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
160 170 180 190 200 210
160 170 180 190 200
pF1KE5 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
220 230 240 250 260 270
>>NP_001263248 (OMIM: 605235,614937) nucleolar protein 3 (270 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 872.2 bits: 168.7 E(85289): 7.7e-42
Smith-Waterman score: 1460; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:63-270)
10 20 30
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL
::::::::::::::::::::::::::::::
NP_001 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTP
160 170 180 190 200 210
160 170 180 190 200
pF1KE5 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS
220 230 240 250 260 270
>>NP_001171986 (OMIM: 605235,614937) nucleolar protein 3 (219 aa)
initn: 661 init1: 635 opt: 651 Z-score: 404.3 bits: 81.9 E(85289): 8.8e-16
Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWT-----P
:::::::::::::::::::::::::::::::::::. : . :. :
NP_001 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHA-TGTAAMTLHAQATGRRRHPARGP
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 EAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPEL
.::: :: : . : .:
NP_001 HAPG----CPELQTLTRPGALRAPRRCNPGPRRSQSQSWKLRPLKRLNRSRSQSQSWNPR
120 130 140 150 160 170
>>XP_005256274 (OMIM: 605235,614937) PREDICTED: nucleola (281 aa)
initn: 661 init1: 635 opt: 651 Z-score: 402.9 bits: 82.0 E(85289): 1.1e-15
Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:63-201)
10 20 30
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLL
::::::::::::::::::::::::::::::
XP_005 WRGRRTPSSPCWPPGPVLAEPSGGWDRAPTMGNAQERPSETIDRERKRLVETLQADSGLL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPA
100 110 120 130 140 150
100 110 120 130 140
pF1KE5 WDWQHVGPGYRDRSYDPPCPGHWT-----PEAPGSGTTCPGLPRASDPDEAGGPEGSEAV
:::::. : . :. :.::: :: : . : .:
XP_005 WDWQHA-TGTAAMTLHAQATGRRRHPARGPHAPG----CPELQTLTRPGALRAPRRCNPG
160 170 180 190 200
150 160 170 180 190 200
pF1KE5 QSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDES
XP_005 PRRSQSQSWKLRPLKRLNRSRSQSQSWNPRLKQNQSRNWSQNRTQSPSPTSRKGTSPKIP
210 220 230 240 250 260
>>XP_011521726 (OMIM: 605235,614937) PREDICTED: nucleola (295 aa)
initn: 654 init1: 635 opt: 651 Z-score: 402.6 bits: 82.0 E(85289): 1.1e-15
Smith-Waterman score: 651; 73.6% identity (77.8% similar) in 144 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWT-----P
:::::::::::::::::::::::::::::::::::. : . :. :
XP_011 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHA-TGTAAMTLHAQATGRRRHPARGP
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 EAPGSGTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPEL
.::: :: : . : .:
XP_011 HAPG----CPELQTLTRPGALRAPRRCNPGPRRSQSQSWKLRPLKRLNRSRSQSQSWNPR
120 130 140 150 160 170
>>NP_001263240 (OMIM: 605235,614937) nucleolar protein 3 (181 aa)
initn: 386 init1: 360 opt: 360 Z-score: 236.7 bits: 50.6 E(85289): 1.9e-06
Smith-Waterman score: 371; 54.9% identity (61.8% similar) in 144 aa overlap (1-144:1-113)
10 20 30 40 50 60
pF1KE5 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRAT-
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 LLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGS
: :: . :: :. :: :: . : :: : ::.
NP_001 --------GTAA---MTLHAQATGRRRHPAR-----GP------HAPGCPELQTLTRPGA
60 70 80 90
130 140 150 160 170 180
pF1KE5 GTTCPGLPRASDPDEAGGPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAE
. :: .: ::. :..
NP_001 LRA----PRRCNP----GPRRSQSQSWKLRPLKRLNRSRSQSQSWNPRLKQNQSRNWSQN
100 110 120 130 140
208 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:29:36 2016 done: Mon Nov 7 22:29:37 2016
Total Scan time: 7.680 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]