FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5202, 205 aa
  1>>>pF1KE5202 205 - 205 aa - 205 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4317+/-0.000432; mu= 4.4548+/- 0.027
 mean_var=152.9134+/-30.479, 0's: 0 Z-trim(115.0): 5  B-trim: 702 in 2/54
 Lambda= 0.103717
 statistics sampled from 25183 (25188) to 25183 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.295), width:  16
 Scan time:  5.400

The best scores are:                                      opt bits E(85289)
NP_115493 (OMIM: 611422) meiotic nuclear division  ( 205) 1329 210.2 1.9e-54
XP_016864177 (OMIM: 611422) PREDICTED: meiotic nuc ( 190) 1239 196.7   2e-50
XP_005263332 (OMIM: 611422) PREDICTED: meiotic nuc ( 190)  998 160.7 1.4e-39
NP_001240790 (OMIM: 611422) meiotic nuclear divisi ( 122)  749 123.3 1.7e-28


>>NP_115493 (OMIM: 611422) meiotic nuclear division prot  (205 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1098.7  bits: 210.2 E(85289): 1.9e-54
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
              130       140       150       160       170       180

              190       200     
pF1KE5 KRKFGFEENKIDRTFGIPEDFDYID
       :::::::::::::::::::::::::
NP_115 KRKFGFEENKIDRTFGIPEDFDYID
              190       200     

>>XP_016864177 (OMIM: 611422) PREDICTED: meiotic nuclear  (190 aa)
 initn: 1239 init1: 1239 opt: 1239  Z-score: 1026.3  bits: 196.7 E(85289): 2e-50
Smith-Waterman score: 1239; 100.0% identity (100.0% similar) in 190 aa overlap (16-205:1-190)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
                      :::::::::::::::::::::::::::::::::::::::::::::
XP_016                MMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
         110       120       130       140       150       160     

              190       200     
pF1KE5 KRKFGFEENKIDRTFGIPEDFDYID
       :::::::::::::::::::::::::
XP_016 KRKFGFEENKIDRTFGIPEDFDYID
         170       180       190

>>XP_005263332 (OMIM: 611422) PREDICTED: meiotic nuclear  (190 aa)
 initn: 1209 init1: 987 opt: 998  Z-score: 831.4  bits: 160.7 E(85289): 1.4e-39
Smith-Waterman score: 1183; 92.2% identity (92.7% similar) in 205 aa overlap (1-205:1-190)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
       :::::::::::::::::::::::::::::::::::.               :::::::::
XP_005 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIH---------------NIFAIKSWA
              130       140       150                      160     

              190       200     
pF1KE5 KRKFGFEENKIDRTFGIPEDFDYID
       :::::::::::::::::::::::::
XP_005 KRKFGFEENKIDRTFGIPEDFDYID
         170       180       190

>>NP_001240790 (OMIM: 611422) meiotic nuclear division p  (122 aa)
 initn: 749 init1: 749 opt: 749  Z-score: 632.7  bits: 123.3 E(85289): 1.7e-28
Smith-Waterman score: 749; 95.9% identity (98.4% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
NP_001 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETAKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
        .                                                          
NP_001 IK                                                          
                                                                   




205 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:28:29 2016 done: Mon Nov  7 22:28:30 2016
 Total Scan time:  5.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]