Result of FASTA (ccds) for
pFN21AE5195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5195, 156 aa
1>>>pF1KE5195 156 - 156 aa - 156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8926+/-0.000646; mu= 15.1620+/- 0.039
mean_var=73.3534+/-14.394, 0's: 0 Z-trim(112.0): 24 B-trim: 6 in 1/50
Lambda= 0.149749
statistics sampled from 12852 (12875) to 12852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.395), width: 16
Scan time: 1.700
The best scores are: opt bits E(32554)
CCDS41914.1 RNASE7 gene_id:84659|Hs108|chr14 ( 156) 1086 242.8 6.7e-65
CCDS9567.1 RNASE8 gene_id:122665|Hs108|chr14 ( 154) 841 189.8 5.7e-49
CCDS9558.1 RNASE6 gene_id:6039|Hs108|chr14 ( 150) 587 134.9 1.8e-32
CCDS9561.1 RNASE2 gene_id:6036|Hs108|chr14 ( 161) 415 97.8 3e-21
CCDS9560.1 RNASE3 gene_id:6037|Hs108|chr14 ( 160) 368 87.6 3.4e-18
CCDS9559.1 RNASE1 gene_id:6035|Hs108|chr14 ( 156) 321 77.5 3.8e-15
CCDS9555.1 RNASE4 gene_id:6038|Hs108|chr14 ( 147) 277 67.9 2.6e-12
>>CCDS41914.1 RNASE7 gene_id:84659|Hs108|chr14 (156 aa)
initn: 1086 init1: 1086 opt: 1086 Z-score: 1278.7 bits: 242.8 E(32554): 6.7e-65
Smith-Waterman score: 1086; 98.7% identity (99.4% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGPVSLTMCKLTSGKYPNCR
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::.::::
CCDS41 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGAVSLTMCKLTSGKHPNCR
70 80 90 100 110 120
130 140 150
pF1KE5 YKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
::::::::::::::::::::::::::::::::::::
CCDS41 YKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
130 140 150
>>CCDS9567.1 RNASE8 gene_id:122665|Hs108|chr14 (154 aa)
initn: 898 init1: 741 opt: 841 Z-score: 992.7 bits: 189.8 E(32554): 5.7e-49
Smith-Waterman score: 841; 78.2% identity (87.8% similar) in 156 aa overlap (1-156:1-154)
10 20 30 40 50 60
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
::::::: :::::::: ::::::. : :::: :::::::: ::.:::::::::::. :::
CCDS95 MAPARAGCCPLLLLLL-GLWVAEVLVRAKPKDMTSSQWFKTQHVQPSPQACNSAMSIINK
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGPVSLTMCKLTSGKYPNCR
.:.::::::::::::::::: :::::.:::::. :::::::::.:::: .::::::::::
CCDS95 YTERCKDLNTFLHEPFSSVAITCQTPNIACKNSCKNCHQSHGPMSLTMGELTSGKYPNCR
60 70 80 90 100 110
130 140 150
pF1KE5 YKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
::::. : :.::: :::. : . :::::::.:.
CCDS95 YKEKHLNTPYIVACDPPQQGDPG-YPLVPVHLDKVV
120 130 140 150
>>CCDS9558.1 RNASE6 gene_id:6039|Hs108|chr14 (150 aa)
initn: 621 init1: 535 opt: 587 Z-score: 696.3 bits: 134.9 E(32554): 1.8e-32
Smith-Waterman score: 587; 55.7% identity (77.9% similar) in 149 aa overlap (8-156:3-150)
10 20 30 40 50 60
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
.: :::::: :: :. : :: .:...::.:::.:::: :: ::..::.
CCDS95 MVLCFPLLLLLLVLWGPVCPLHAWPKRLTKAHWFEIQHIQPSPLQCNRAMSGINN
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGPVSLTMCKLTSGKYPNCR
.:..:: :::::. :..:::.:. .:.::: .::::: ::..: :.:::::::.::
CCDS95 YTQHCKHQNTFLHDSFQNVAAVCDLLSIVCKNRRHNCHQSSKPVNMTDCRLTSGKYPQCR
60 70 80 90 100 110
130 140 150
pF1KE5 YKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
:. : : ..::: ::::.: ..::::::: .:
CCDS95 YSAAAQYKFFIVACDPPQKSDPP-YKLVPVHLDSIL
120 130 140 150
>>CCDS9561.1 RNASE2 gene_id:6036|Hs108|chr14 (161 aa)
initn: 363 init1: 197 opt: 415 Z-score: 495.1 bits: 97.8 E(32554): 3e-21
Smith-Waterman score: 415; 42.0% identity (68.7% similar) in 150 aa overlap (13-156:12-161)
10 20 30 40 50 60
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
::::::: ..: . .:: .: .:::. ::.. . : :..::. ::.
CCDS95 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINN
10 20 30 40 50
70 80 90 100 110
pF1KE5 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGD--KNCHQSHGPVSLTMCKLTSGK---
. .:::. :::: :..:. .: .:...: .. ::::.: . : : :.::. .
CCDS95 YQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQN
60 70 80 90 100 110
120 130 140 150
pF1KE5 YPNCRYKEKRQNKSYVVACKP-PQKKDSQQFHLVPVHLDRVL
:::: . : :.::: :..: :. .:::::::..
CCDS95 ISNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
120 130 140 150 160
>>CCDS9560.1 RNASE3 gene_id:6037|Hs108|chr14 (160 aa)
initn: 359 init1: 234 opt: 368 Z-score: 440.2 bits: 87.6 E(32554): 3.4e-18
Smith-Waterman score: 368; 39.6% identity (64.4% similar) in 149 aa overlap (13-156:12-160)
10 20 30 40 50 60
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
::::::: .: . :.: .: .::: :::.. .: :. ::. ::.
CCDS95 MVPKLFTSQICLLLLLGLMGVEGSLHARPPQFTRAQWFAIQHISLNPPRCTIAMRAINN
10 20 30 40 50
70 80 90 100 110
pF1KE5 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGD--KNCHQSHGPVSLTMCKLTSG---K
. :::. ::::. :..:. .: . .: : .. .:::.:. : : : : . .
CCDS95 YRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLINPGAQN
60 70 80 90 100 110
120 130 140 150
pF1KE5 YPNCRYKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
:: : .. . ::::: . .:: .. .:::::: ..
CCDS95 ISNCTYADRPGRRFYVVACDNRDPRDSPRYPVVPVHLDTTI
120 130 140 150 160
>>CCDS9559.1 RNASE1 gene_id:6035|Hs108|chr14 (156 aa)
initn: 345 init1: 217 opt: 321 Z-score: 385.5 bits: 77.5 E(32554): 3.8e-15
Smith-Waterman score: 321; 37.3% identity (62.7% similar) in 150 aa overlap (11-153:14-149)
10 20 30 40 50
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQP--SPQA----C
.:.::.:: :: : .: . .. :. :::. ::.. :
CCDS95 MALEKSLVRLLLLVLILLVLG-WVQ--PSLGKE---SRAKKFQRQHMDSDSSPSSSSTYC
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 NSAMKNINKHTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGPVSLTMCKL
:. :. : ::: .:::.:::. .: .: :..::::. ::..:.. . .: :.:
CCDS95 NQMMRRRNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRL
60 70 80 90 100 110
120 130 140 150
pF1KE5 TSG-KYPNCRYKEKRQNKSYVVACKPPQKKDSQQFHLVPVHLDRVL
:.: .:::: :. . ... .:::. ::::.:
CCDS95 TNGSRYPNCAYRTSPKERHIIVACEGSP--------YVPVHFDASVEDST
120 130 140 150
>>CCDS9555.1 RNASE4 gene_id:6038|Hs108|chr14 (147 aa)
initn: 276 init1: 154 opt: 277 Z-score: 334.4 bits: 67.9 E(32554): 2.6e-12
Smith-Waterman score: 288; 39.3% identity (59.3% similar) in 150 aa overlap (11-153:12-146)
10 20 30 40 50
pF1KE5 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQP-----SPQACNSA
:::: :::: ... : : :: : : ::..: : . ::
CCDS95 MALQRTHSLLLLLLLTLLGLGLVQ-P-SYGQDGMY--QRFLRQHVHPEETGGSDRYCNLM
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 MKNINKHTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGDKNCHQSHGPVSLTMCKLT-S
:. . .:: .:::.:: . .. . :.: .: :::: :::. : :..: :. : :
CCDS95 MQRRKMTLYHCKRFNTFIHEDIWNIRSICSTTNIQCKNGKMNCHE--GVVKVTDCRDTGS
60 70 80 90 100 110
120 130 140 150
pF1KE5 GKYPNCRYKEKRQNKSYVVACKP-PQKKDSQQFHLVPVHLDRVL
.. :::::. ... :.::. :: ::::.:
CCDS95 SRAPNCRYRAIASTRRVVIACEGNPQ---------VPVHFDG
120 130 140
156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:26:46 2016 done: Mon Nov 7 22:26:46 2016
Total Scan time: 1.700 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]