FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5190, 132 aa
  1>>>pF1KE5190 132 - 132 aa - 132 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1539+/-0.000284; mu= 11.4695+/- 0.018
 mean_var=59.2130+/-11.357, 0's: 0 Z-trim(117.9): 13  B-trim: 18 in 1/55
 Lambda= 0.166673
 statistics sampled from 30399 (30409) to 30399 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.357), width:  16
 Scan time:  3.950

The best scores are:                                      opt bits E(85289)
NP_000967 (OMIM: 180475) 60S ribosomal protein L12 ( 165)  620 156.7 1.2e-38


>>NP_000967 (OMIM: 180475) 60S ribosomal protein L12 [Ho  (165 aa)
 initn: 859 init1: 620 opt: 620  Z-score: 814.7  bits: 156.7 E(85289): 1.2e-38
Smith-Waterman score: 790; 79.9% identity (79.9% similar) in 164 aa overlap (2-132:2-165)

               10        20        30                              
pF1KE5 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGL-----------------------
        ::::::::::::::::::::::::::::::::::::                       
NP_000 MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV
               10        20        30        40        50        60

                  40        50        60        70        80       
pF1KE5 ----------IEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS
               70        80        90       100       110       120

        90       100       110       120       130  
pF1KE5 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
       :::::::::::::::::::::::::::::::::::::::::::::
NP_000 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
              130       140       150       160     




132 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:26:05 2016 done: Mon Nov  7 22:26:06 2016
 Total Scan time:  3.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]