FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5185, 130 aa
  1>>>pF1KE5185 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7824+/-0.000347; mu= 13.0337+/- 0.022
 mean_var=51.3167+/- 9.950, 0's: 0 Z-trim(113.5): 5  B-trim: 445 in 1/55
 Lambda= 0.179038
 statistics sampled from 22848 (22851) to 22848 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.268), width:  16
 Scan time:  4.720

The best scores are:                                      opt bits E(85289)
NP_057053 (OMIM: 611980) 28S ribosomal protein S17 ( 130)  830 221.8 2.5e-58


>>NP_057053 (OMIM: 611980) 28S ribosomal protein S17, mi  (130 aa)
 initn: 830 init1: 830 opt: 830  Z-score: 1168.2  bits: 221.8 E(85289): 2.5e-58
Smith-Waterman score: 830; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE5 MSVVRSSVHARWIVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSVVRSSVHARWIVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 GDIVLLRALPVPRAKHVKHELAEIVFKVGKVIDPVTGKPCAGTTYLESPLSSETTQLSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GDIVLLRALPVPRAKHVKHELAEIVFKVGKVIDPVTGKPCAGTTYLESPLSSETTQLSKN
               70        80        90       100       110       120

              130
pF1KE5 LEELNISSAQ
       ::::::::::
NP_057 LEELNISSAQ
              130




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:23:21 2016 done: Mon Nov  7 22:23:22 2016
 Total Scan time:  4.720 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]