FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5183, 115 aa
  1>>>pF1KE5183 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9725+/-0.00025; mu= 9.4403+/- 0.016
 mean_var=94.3692+/-18.969, 0's: 0 Z-trim(123.4): 5  B-trim: 1861 in 2/52
 Lambda= 0.132026
 statistics sampled from 43169 (43174) to 43169 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.506), width:  16
 Scan time:  4.670

The best scores are:                                      opt bits E(85289)
NP_000995 (OMIM: 180530) 60S acidic ribosomal prot ( 115)  719 145.3 2.1e-35
NP_998890 (OMIM: 180520) 60S acidic ribosomal prot (  89)  199 46.1 1.1e-05
NP_000994 (OMIM: 180520) 60S acidic ribosomal prot ( 114)  199 46.2 1.4e-05
NP_000993 (OMIM: 180510) 60S acidic ribosomal prot ( 317)  165 40.0  0.0027
NP_444505 (OMIM: 180510) 60S acidic ribosomal prot ( 317)  165 40.0  0.0027


>>NP_000995 (OMIM: 180530) 60S acidic ribosomal protein   (115 aa)
 initn: 719 init1: 719 opt: 719  Z-score: 756.6  bits: 145.3 E(85289): 2.1e-35
Smith-Waterman score: 719; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE5 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE5 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KLASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEKKDEKKEESEESDDDMGFGLFD
               70        80        90       100       110     

>>NP_998890 (OMIM: 180520) 60S acidic ribosomal protein   (89 aa)
 initn: 183 init1: 170 opt: 199  Z-score: 222.8  bits: 46.1 E(85289): 1.1e-05
Smith-Waterman score: 199; 66.7% identity (81.7% similar) in 60 aa overlap (59-115:31-89)

       30        40        50        60          70        80      
pF1KE5 SVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLA-SVPAGG-AVAVSAAPGSAAPAAGS
                                     ::.:  .: ::: : :..::: ...:: ..
NP_998 MASVSELACIYSALILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAP-AGGPAPST
               10        20        30        40        50          

         90        100       110     
pF1KE5 APAAAEEKKDE-KKEESEESDDDMGFGLFD
       : : ::::: : ::::::::::::::::::
NP_998 AAAPAEEKKVEAKKEESEESDDDMGFGLFD
      60        70        80         

>>NP_000994 (OMIM: 180520) 60S acidic ribosomal protein   (114 aa)
 initn: 183 init1: 170 opt: 199  Z-score: 221.3  bits: 46.2 E(85289): 1.4e-05
Smith-Waterman score: 207; 48.0% identity (69.6% similar) in 102 aa overlap (26-115:15-114)

               10        20        30        40        50          
pF1KE5 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIED----VIA
                                :: .  . . .:..: .: .  : :.:     ..:
NP_000            MASVSELACIYSALILHDDEVTVTEDKINALI-KAAGVNVEPFWPGLFA
                          10        20        30         40        

              60          70        80        90        100        
pF1KE5 QG-----IGKLA-SVPAGG-AVAVSAAPGSAAPAAGSAPAAAEEKKDE-KKEESEESDDD
       ..     ::.:  .: ::: : :..::: ...:: ..: : ::::: : :::::::::::
NP_000 KALANVNIGSLICNVGAGGPAPAAGAAP-AGGPAPSTAAAPAEEKKVEAKKEESEESDDD
       50        60        70         80        90       100       

      110     
pF1KE5 MGFGLFD
       :::::::
NP_000 MGFGLFD
       110    

>>NP_000993 (OMIM: 180510) 60S acidic ribosomal protein   (317 aa)
 initn: 225 init1: 144 opt: 165  Z-score: 180.0  bits: 40.0 E(85289): 0.0027
Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (62-115:269-317)

              40        50        60        70        80        90 
pF1KE5 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA
                                     ::.  :  :.:  ::  .:::::..:::  
NP_000 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA--
      240       250       260       270       280       290        

             100       110     
pF1KE5 EEKKDEKKEESEESDDDMGFGLFD
          : : ::::::::.::::::::
NP_000 ---KVEAKEESEESDEDMGFGLFD
           300       310       

>>NP_444505 (OMIM: 180510) 60S acidic ribosomal protein   (317 aa)
 initn: 225 init1: 144 opt: 165  Z-score: 180.0  bits: 40.0 E(85289): 0.0027
Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (62-115:269-317)

              40        50        60        70        80        90 
pF1KE5 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA
                                     ::.  :  :.:  ::  .:::::..:::  
NP_444 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA--
      240       250       260       270       280       290        

             100       110     
pF1KE5 EEKKDEKKEESEESDDDMGFGLFD
          : : ::::::::.::::::::
NP_444 ---KVEAKEESEESDEDMGFGLFD
           300       310       




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:22:24 2016 done: Mon Nov  7 22:22:24 2016
 Total Scan time:  4.670 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]