FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5180, 152 aa
  1>>>pF1KE5180 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5634+/-0.000269; mu= 16.0635+/- 0.017
 mean_var=60.7941+/-12.571, 0's: 0 Z-trim(119.6): 8  B-trim: 1716 in 1/54
 Lambda= 0.164491
 statistics sampled from 33716 (33725) to 33716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.395), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
XP_005259194 (OMIM: 603675) PREDICTED: 40S ribosom ( 152) 1075 262.5 1.8e-70
NP_001011 (OMIM: 603675) 40S ribosomal protein S16 ( 146)  543 136.3 1.8e-32
NP_001308040 (OMIM: 603675) 40S ribosomal protein  ( 129)  221 59.8 1.7e-09


>>XP_005259194 (OMIM: 603675) PREDICTED: 40S ribosomal p  (152 aa)
 initn: 1075 init1: 1075 opt: 1075  Z-score: 1386.0  bits: 262.5 E(85289): 1.8e-70
Smith-Waterman score: 1075; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KE5 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ERFAGVDIRVRVKGGGHVAQIYGESQELGAWRRWLWEGGLHSAPVPFNCVSFSQLSVSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERFAGVDIRVRVKGGGHVAQIYGESQELGAWRRWLWEGGLHSAPVPFNCVSFSQLSVSPS
               70        80        90       100       110       120

              130       140       150  
pF1KE5 PKPWWPITRNMWMRLPRRRSKTSSSSMTGPCW
       ::::::::::::::::::::::::::::::::
XP_005 PKPWWPITRNMWMRLPRRRSKTSSSSMTGPCW
              130       140       150  

>>NP_001011 (OMIM: 603675) 40S ribosomal protein S16 iso  (146 aa)
 initn: 540 init1: 540 opt: 543  Z-score: 703.9  bits: 136.3 E(85289): 1.8e-32
Smith-Waterman score: 543; 94.3% identity (96.6% similar) in 88 aa overlap (1-88:1-88)

               10        20        30        40        50        60
pF1KE5 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ERFAGVDIRVRVKGGGHVAQIYGESQELGAWRRWLWEGGLHSAPVPFNCVSFSQLSVSPS
       ::::::::::::::::::::::.  : .                                
NP_001 ERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL
               70        80        90       100       110       120

>>NP_001308040 (OMIM: 603675) 40S ribosomal protein S16   (129 aa)
 initn: 221 init1: 221 opt: 221  Z-score: 291.6  bits: 59.8 E(85289): 1.7e-09
Smith-Waterman score: 385; 75.0% identity (77.3% similar) in 88 aa overlap (1-88:1-71)

               10        20        30        40        50        60
pF1KE5 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGK
       :::::::::::::::::::::::::::::::::                 ::::::::::
NP_001 MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIK-----------------LLEPVLLLGK
               10        20        30                         40   

               70        80        90       100       110       120
pF1KE5 ERFAGVDIRVRVKGGGHVAQIYGESQELGAWRRWLWEGGLHSAPVPFNCVSFSQLSVSPS
       ::::::::::::::::::::::.  : .                                
NP_001 ERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL
            50        60        70        80        90       100   




152 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:20:44 2016 done: Mon Nov  7 22:20:44 2016
 Total Scan time:  3.700 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]