FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5176, 115 aa
  1>>>pF1KE5176 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9701+/-0.000301; mu= 12.9393+/- 0.019
 mean_var=69.2650+/-13.613, 0's: 0 Z-trim(117.6): 19  B-trim: 0 in 0/52
 Lambda= 0.154105
 statistics sampled from 29713 (29717) to 29713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.348), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(85289)
NP_001035737 (OMIM: 606121) DNA-directed RNA polym ( 115)  714 166.7 7.6e-42
NP_001135886 (OMIM: 606121) DNA-directed RNA polym ( 141)  707 165.2 2.6e-41
NP_055293 (OMIM: 606121) DNA-directed RNA polymera ( 148)  638 149.9 1.1e-36
NP_001035738 (OMIM: 606121) DNA-directed RNA polym (  71)  417 100.5   4e-22


>>NP_001035737 (OMIM: 606121) DNA-directed RNA polymeras  (115 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 872.2  bits: 166.7 E(85289): 7.6e-42
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE5 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE5 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
               70        80        90       100       110     

>>NP_001135886 (OMIM: 606121) DNA-directed RNA polymeras  (141 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 862.6  bits: 165.2 E(85289): 2.6e-41
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 114 aa overlap (2-115:28-141)

                                         10        20        30    
pF1KE5                           MEVKDANSALLSNYETLKYISKTPCRHQSPEIVR
                                  :::::::::::::::::::::::::::::::::
NP_001 MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVR
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KE5 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE
               70        80        90       100       110       120

          100       110     
pF1KE5 PEAEQKKNTNSNVAMDEEDPA
       :::::::::::::::::::::
NP_001 PEAEQKKNTNSNVAMDEEDPA
              130       140 

>>NP_055293 (OMIM: 606121) DNA-directed RNA polymerase I  (148 aa)
 initn: 638 init1: 638 opt: 638  Z-score: 779.4  bits: 149.9 E(85289): 1.1e-36
Smith-Waterman score: 638; 100.0% identity (100.0% similar) in 102 aa overlap (14-115:47-148)

                                10        20        30        40   
pF1KE5                  MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH
                                     ::::::::::::::::::::::::::::::
NP_055 FQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSH
         20        30        40        50        60        70      

            50        60        70        80        90       100   
pF1KE5 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT
         80        90       100       110       120       130      

           110     
pF1KE5 NSNVAMDEEDPA
       ::::::::::::
NP_055 NSNVAMDEEDPA
        140        

>>NP_001035738 (OMIM: 606121) DNA-directed RNA polymeras  (71 aa)
 initn: 417 init1: 417 opt: 417  Z-score: 518.3  bits: 100.5 E(85289): 4e-22
Smith-Waterman score: 417; 100.0% identity (100.0% similar) in 68 aa overlap (48-115:4-71)

        20        30        40        50        60        70       
pF1KE5 KYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE
                                     ::::::::::::::::::::::::::::::
NP_001                            MEVAEKLQLLNHRPVTAVEIQLMVEESEERLTE
                                          10        20        30   

        80        90       100       110     
pF1KE5 EQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
       ::::::::::::::::::::::::::::::::::::::
NP_001 EQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
            40        50        60        70 




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:37:17 2016 done: Tue Nov  8 10:37:18 2016
 Total Scan time:  3.970 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]