FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5176, 115 aa
  1>>>pF1KE5176 115 - 115 aa - 115 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5389+/-0.000682; mu= 9.4653+/- 0.041
 mean_var=68.3225+/-13.596, 0's: 0 Z-trim(110.2): 16  B-trim: 81 in 1/52
 Lambda= 0.155164
 statistics sampled from 11434 (11438) to 11434 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS47599.1 CRCP gene_id:27297|Hs108|chr7          ( 115)  714 167.9 1.3e-42
CCDS55116.1 CRCP gene_id:27297|Hs108|chr7          ( 141)  707 166.3 4.5e-42
CCDS5532.1 CRCP gene_id:27297|Hs108|chr7           ( 148)  638 150.9 2.1e-37
CCDS47600.1 CRCP gene_id:27297|Hs108|chr7          (  71)  417 101.3 8.6e-23


>>CCDS47599.1 CRCP gene_id:27297|Hs108|chr7               (115 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 878.7  bits: 167.9 E(32554): 1.3e-42
Smith-Waterman score: 714; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE5 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE5 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
               70        80        90       100       110     

>>CCDS55116.1 CRCP gene_id:27297|Hs108|chr7               (141 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 868.9  bits: 166.3 E(32554): 4.5e-42
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 114 aa overlap (2-115:28-141)

                                         10        20        30    
pF1KE5                           MEVKDANSALLSNYETLKYISKTPCRHQSPEIVR
                                  :::::::::::::::::::::::::::::::::
CCDS55 MQRGDPGEHLGARSWHLGAVGGGGDSCEVKDANSALLSNYETLKYISKTPCRHQSPEIVR
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KE5 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAE
               70        80        90       100       110       120

          100       110     
pF1KE5 PEAEQKKNTNSNVAMDEEDPA
       :::::::::::::::::::::
CCDS55 PEAEQKKNTNSNVAMDEEDPA
              130       140 

>>CCDS5532.1 CRCP gene_id:27297|Hs108|chr7                (148 aa)
 initn: 638 init1: 638 opt: 638  Z-score: 785.1  bits: 150.9 E(32554): 2.1e-37
Smith-Waterman score: 638; 100.0% identity (100.0% similar) in 102 aa overlap (14-115:47-148)

                                10        20        30        40   
pF1KE5                  MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH
                                     ::::::::::::::::::::::::::::::
CCDS55 FQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRHQSPEIVREFLTALKSH
         20        30        40        50        60        70      

            50        60        70        80        90       100   
pF1KE5 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNT
         80        90       100       110       120       130      

           110     
pF1KE5 NSNVAMDEEDPA
       ::::::::::::
CCDS55 NSNVAMDEEDPA
        140        

>>CCDS47600.1 CRCP gene_id:27297|Hs108|chr7               (71 aa)
 initn: 417 init1: 417 opt: 417  Z-score: 522.6  bits: 101.3 E(32554): 8.6e-23
Smith-Waterman score: 417; 100.0% identity (100.0% similar) in 68 aa overlap (48-115:4-71)

        20        30        40        50        60        70       
pF1KE5 KYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTE
                                     ::::::::::::::::::::::::::::::
CCDS47                            MEVAEKLQLLNHRPVTAVEIQLMVEESEERLTE
                                          10        20        30   

        80        90       100       110     
pF1KE5 EQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
       ::::::::::::::::::::::::::::::::::::::
CCDS47 EQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
            40        50        60        70 




115 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:37:17 2016 done: Tue Nov  8 10:37:17 2016
 Total Scan time:  1.260 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]