FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5174, 166 aa
  1>>>pF1KE5174 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8629+/-0.000642; mu= 7.0983+/- 0.039
 mean_var=125.8345+/-25.119, 0's: 0 Z-trim(115.8): 2  B-trim: 0 in 0/51
 Lambda= 0.114334
 statistics sampled from 16354 (16356) to 16354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.502), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS8096.1 MRPL49 gene_id:740|Hs108|chr11          ( 166) 1171 202.8 8.2e-53


>>CCDS8096.1 MRPL49 gene_id:740|Hs108|chr11               (166 aa)
 initn: 1171 init1: 1171 opt: 1171  Z-score: 1061.7  bits: 202.8 E(32554): 8.2e-53
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE5 MAATMFRATLRGWRTGVQRGCGLRLLSQTQGPPDYPRFVESVDEYQFVERLLPATRIPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MAATMFRATLRGWRTGVQRGCGLRLLSQTQGPPDYPRFVESVDEYQFVERLLPATRIPDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PKHEHYPTPSGWQPPRDPPPNLPYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PKHEHYPTPSGWQPPRDPPPNLPYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWAL
               70        80        90       100       110       120

              130       140       150       160      
pF1KE5 QKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQELKAWLLEKGF
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QKDVEDFLSPLLGKTPVTQVNEVTGTLRIKGYFDQELKAWLLEKGF
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:17:49 2016 done: Mon Nov  7 22:17:50 2016
 Total Scan time:  2.120 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]