Result of FASTA (ccds) for
pFN21AE5172
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5172, 162 aa
1>>>pF1KE5172 162 - 162 aa - 162 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0473+/-0.000649; mu= 13.0888+/- 0.039
mean_var=57.9214+/-11.795, 0's: 0 Z-trim(110.3): 37 B-trim: 292 in 2/49
Lambda= 0.168521
statistics sampled from 11436 (11475) to 11436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.352), width: 16
Scan time: 1.710
The best scores are: opt bits E(32554)
CCDS5064.1 SNX3 gene_id:8724|Hs108|chr6 ( 162) 1084 271.1 2e-73
CCDS14405.1 SNX12 gene_id:29934|Hs108|chrX ( 162) 910 228.8 1.1e-60
CCDS59169.1 SNX12 gene_id:29934|Hs108|chrX ( 158) 877 220.8 2.8e-58
CCDS75501.1 SNX3 gene_id:8724|Hs108|chr6 ( 140) 751 190.1 4.2e-49
CCDS5065.1 SNX3 gene_id:8724|Hs108|chr6 ( 130) 531 136.6 5e-33
CCDS43865.1 SNX30 gene_id:401548|Hs108|chr9 ( 437) 247 67.9 8.6e-12
CCDS755.2 SNX7 gene_id:51375|Hs108|chr1 ( 451) 245 67.4 1.2e-11
CCDS32266.1 SNX1 gene_id:6642|Hs108|chr15 ( 522) 240 66.2 3.3e-11
CCDS58371.1 SNX1 gene_id:6642|Hs108|chr15 ( 557) 240 66.2 3.4e-11
CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17 ( 262) 232 64.1 7e-11
CCDS11526.1 SNX11 gene_id:29916|Hs108|chr17 ( 270) 232 64.1 7.2e-11
>>CCDS5064.1 SNX3 gene_id:8724|Hs108|chr6 (162 aa)
initn: 1084 init1: 1084 opt: 1084 Z-score: 1431.5 bits: 271.1 E(32554): 2e-73
Smith-Waterman score: 1084; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)
10 20 30 40 50 60
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
70 80 90 100 110 120
130 140 150 160
pF1KE5 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
::::::::::::::::::::::::::::::::::::::::::
CCDS50 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
130 140 150 160
>>CCDS14405.1 SNX12 gene_id:29934|Hs108|chrX (162 aa)
initn: 907 init1: 907 opt: 910 Z-score: 1202.9 bits: 228.8 E(32554): 1.1e-60
Smith-Waterman score: 910; 79.0% identity (96.3% similar) in 162 aa overlap (1-161:1-162)
10 20 30 40 50
pF1KE5 MAET-VADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPI
:..: ::::::: .:::.:.:::::::::::::. :::::::::.::::::.:..:::::
CCDS14 MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 FKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK
:::::: :::::::::::..::::.::.:::::::::. ::::::::.:::...:::::.
CCDS14 FKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERR
70 80 90 100 110 120
120 130 140 150 160
pF1KE5 QGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
:::::::::.:::::::::::::::::.: ::..:.:.:.:.
CCDS14 QGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVRQ
130 140 150 160
>>CCDS59169.1 SNX12 gene_id:29934|Hs108|chrX (158 aa)
initn: 878 init1: 626 opt: 877 Z-score: 1159.7 bits: 220.8 E(32554): 2.8e-58
Smith-Waterman score: 877; 78.4% identity (93.8% similar) in 162 aa overlap (1-161:1-158)
10 20 30 40 50
pF1KE5 MAET-VADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPI
:..: ::::::: .:::.:.:::::::::::::. :::::::::.:::::: :::::
CCDS59 MSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYE----TNLPI
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 FKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK
:::::: :::::::::::..::::.::.:::::::::. ::::::::.:::...:::::.
CCDS59 FKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERR
60 70 80 90 100 110
120 130 140 150 160
pF1KE5 QGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
:::::::::.:::::::::::::::::.: ::..:.:.:.:.
CCDS59 QGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVRQ
120 130 140 150
>>CCDS75501.1 SNX3 gene_id:8724|Hs108|chr6 (140 aa)
initn: 750 init1: 737 opt: 751 Z-score: 994.9 bits: 190.1 E(32554): 4.2e-49
Smith-Waterman score: 888; 86.4% identity (86.4% similar) in 162 aa overlap (1-162:1-140)
10 20 30 40 50 60
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF
:::::::::::::::::::::::::::::::: ::::::
CCDS75 MAETVADTRRLITKPQNLNDAYGPPSNFLEID----------------------TNLPIF
10 20 30
70 80 90 100 110 120
pF1KE5 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
40 50 60 70 80 90
130 140 150 160
pF1KE5 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
::::::::::::::::::::::::::::::::::::::::::
CCDS75 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
100 110 120 130 140
>>CCDS5065.1 SNX3 gene_id:8724|Hs108|chr6 (130 aa)
initn: 531 init1: 531 opt: 531 Z-score: 706.4 bits: 136.6 E(32554): 5e-33
Smith-Waterman score: 803; 80.2% identity (80.2% similar) in 162 aa overlap (1-162:1-130)
10 20 30 40 50 60
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVK------
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 KLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
::::::::::::::::::::::::::::::::::
CCDS50 --------------------------VVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQ
60 70 80
130 140 150 160
pF1KE5 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
::::::::::::::::::::::::::::::::::::::::::
CCDS50 GLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
90 100 110 120 130
>>CCDS43865.1 SNX30 gene_id:401548|Hs108|chr9 (437 aa)
initn: 240 init1: 131 opt: 247 Z-score: 325.2 bits: 67.9 E(32554): 8.6e-12
Smith-Waterman score: 247; 31.2% identity (66.7% similar) in 141 aa overlap (6-145:69-203)
10 20 30
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSN
:.. :... : .: : ... : :..
CCDS43 PSPDLLMARSFGDKDLILPNGGTPAGTSSPASSSSLLNRLQLDDDIDGETRDLFVI-VDD
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 PQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKV-VVPPLPG
:. . ::.: .:.. : : : .:::::.::.::::.::. . . ..::::
CCDS43 PKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRSKLEESQPTHLIPPLPE
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE5 KAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSY
: .. . : :...:.: :...:..:..... ::. . .. ...::
CCDS43 KFVVKGVVDR-----FSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFLTAKDLNAYK
160 170 180 190 200 210
160
pF1KE5 TPSKIRHA
CCDS43 KQGIALLTRMGESVKHVTGGYKLRTRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIE
220 230 240 250 260 270
>>CCDS755.2 SNX7 gene_id:51375|Hs108|chr1 (451 aa)
initn: 246 init1: 114 opt: 245 Z-score: 322.3 bits: 67.4 E(32554): 1.2e-11
Smith-Waterman score: 245; 35.8% identity (66.7% similar) in 123 aa overlap (24-145:91-208)
10 20 30 40 50
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRV
: . : : :..:.. . : ::.: .
CCDS75 DASLMDMNSFSPMMPTSPLSMINQIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIIT
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE5 KTNLPIFKLKESTVRRRYSDFEWLRSELER-ESKVVVPPLPGKAFLRQLPFRGDDGIFDD
::. : .: :::::.:: ::...::. . ...:::: : ... . : :.:
CCDS75 KTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER-----FND
130 140 150 160 170
120 130 140 150 160
pF1KE5 NFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
.::: :...:..:.:..: :: .. ...::
CCDS75 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVRA
180 190 200 210 220 230
CCDS75 VASSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILW
240 250 260 270 280 290
>>CCDS32266.1 SNX1 gene_id:6642|Hs108|chr15 (522 aa)
initn: 242 init1: 139 opt: 240 Z-score: 314.8 bits: 66.2 E(32554): 3.3e-11
Smith-Waterman score: 240; 27.9% identity (69.8% similar) in 129 aa overlap (29-153:145-273)
10 20 30 40 50
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLP
: . ...:. .: : . ...:.. ..:.::
CCDS32 SLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLP
120 130 140 150 160 170
60 70 80 90 100 110
pF1KE5 IFKLKESTVRRRYSDFEWLRSEL-ERESK--VVVPPLPGKAFLRQLPFR-GDDGIFDDNF
.:. :. .:.::.::: : .: :..:. .::: : :... . . : . . .:
CCDS32 LFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEF
180 190 200 210 220 230
120 130 140 150 160
pF1KE5 IEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
.:.:. .::........:: .. .. ::. : . ..
CCDS32 LEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDA
240 250 260 270 280 290
CCDS32 VSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAML
300 310 320 330 340 350
>>CCDS58371.1 SNX1 gene_id:6642|Hs108|chr15 (557 aa)
initn: 242 init1: 139 opt: 240 Z-score: 314.4 bits: 66.2 E(32554): 3.4e-11
Smith-Waterman score: 240; 27.9% identity (69.8% similar) in 129 aa overlap (29-153:145-273)
10 20 30 40 50
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRGRFTTYEIRVKTNLP
: . ...:. .: : . ...:.. ..:.::
CCDS58 SLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLP
120 130 140 150 160 170
60 70 80 90 100 110
pF1KE5 IFKLKESTVRRRYSDFEWLRSEL-ERESK--VVVPPLPGKAFLRQLPFR-GDDGIFDDNF
.:. :. .:.::.::: : .: :..:. .::: : :... . . : . . .:
CCDS58 LFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEF
180 190 200 210 220 230
120 130 140 150 160
pF1KE5 IEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
.:.:. .::........:: .. .. ::. : . ..
CCDS58 LEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDA
240 250 260 270 280 290
CCDS58 VSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAML
300 310 320 330 340 350
>>CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17 (262 aa)
initn: 239 init1: 112 opt: 232 Z-score: 308.8 bits: 64.1 E(32554): 7e-11
Smith-Waterman score: 250; 37.4% identity (66.7% similar) in 123 aa overlap (29-149:9-122)
10 20 30 40 50
pF1KE5 MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGR-GRFTTYEIRVKTNLPI
. . :..:.. . : . .. :.: ..::
CCDS82 MVCREQEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKA
10 20 30 40
60 70 80 90 100 110
pF1KE5 FKLKESTVRRRYSDFEWLRSELERESKVV-VPPLPGKAFLRQLPFRGDDGIFDDNFIEER
: : : ::::: .: :::..:.:.. .: :: ::::. : : .:.:::.:
CCDS82 FTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKS-----TFFGT----SDEFIEKR
50 60 70 80 90
120 130 140 150 160
pF1KE5 KQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIRHA
.:::..:..:: . .. ::.:::...
CCDS82 RQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNC
100 110 120 130 140 150
CCDS82 GWAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLE
160 170 180 190 200 210
162 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:16:27 2016 done: Mon Nov 7 22:16:28 2016
Total Scan time: 1.710 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]