FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5171, 161 aa
  1>>>pF1KE5171 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3362+/-0.00058; mu= 7.5591+/- 0.035
 mean_var=74.8160+/-14.848, 0's: 0 Z-trim(113.2): 2  B-trim: 0 in 0/52
 Lambda= 0.148278
 statistics sampled from 13899 (13900) to 13899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.427), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS8209.1 LAMTOR1 gene_id:55004|Hs108|chr11       ( 161) 1046 232.0 1.2e-61


>>CCDS8209.1 LAMTOR1 gene_id:55004|Hs108|chr11            (161 aa)
 initn: 1046 init1: 1046 opt: 1046  Z-score: 1220.0  bits: 232.0 E(32554): 1.2e-61
Smith-Waterman score: 1046; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGCCYSSENEDSDQDREERKLLLDPSSPPTKALNGAEPNYHSLPSARTDEQALLSSILAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TASNIIDVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLA
               70        80        90       100       110       120

              130       140       150       160 
pF1KE5 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
       :::::::::::::::::::::::::::::::::::::::::
CCDS82 SEPIPFSDLQQVSRIAAYAYSALSQIRVDAKEELVVQFGIP
              130       140       150       160 




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:15:53 2016 done: Mon Nov  7 22:15:53 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]