Result of FASTA (omim) for
pFN21AE5169
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5169, 157 aa
1>>>pF1KE5169 157 - 157 aa - 157 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9438+/-0.000299; mu= 14.2287+/- 0.019
mean_var=62.6200+/-12.353, 0's: 0 Z-trim(116.7): 8 B-trim: 1581 in 1/53
Lambda= 0.162076
statistics sampled from 28113 (28121) to 28113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.33), width: 16
Scan time: 4.920
The best scores are: opt bits E(85289)
XP_016873443 (OMIM: 614460) PREDICTED: ubiquitin c ( 976) 1044 252.5 1.3e-66
XP_011518498 (OMIM: 614460) PREDICTED: ubiquitin c ( 976) 1044 252.5 1.3e-66
XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin c (1275) 1044 252.6 1.6e-66
NP_060414 (OMIM: 614460) ubiquitin carboxyl-termin (1287) 1044 252.6 1.6e-66
NP_001269588 (OMIM: 614460) ubiquitin carboxyl-ter (1355) 1044 252.6 1.7e-66
NP_001317137 (OMIM: 614460) ubiquitin carboxyl-ter (1375) 1044 252.6 1.7e-66
>>XP_016873443 (OMIM: 614460) PREDICTED: ubiquitin carbo (976 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1317.0 bits: 252.5 E(85289): 1.3e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:820-976)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
XP_016 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
790 800 810 820 830 840
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
850 860 870 880 890 900
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
910 920 930 940 950 960
pF1KE5 NKDLTQD
:::::::
XP_016 NKDLTQD
970
>>XP_011518498 (OMIM: 614460) PREDICTED: ubiquitin carbo (976 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1317.0 bits: 252.5 E(85289): 1.3e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:820-976)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
XP_011 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
790 800 810 820 830 840
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
850 860 870 880 890 900
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
910 920 930 940 950 960
pF1KE5 NKDLTQD
:::::::
XP_011 NKDLTQD
970
>>XP_016873442 (OMIM: 614460) PREDICTED: ubiquitin carbo (1275 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1315.3 bits: 252.6 E(85289): 1.6e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1119-1275)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
XP_016 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
1090 1100 1110 1120 1130 1140
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
1150 1160 1170 1180 1190 1200
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
1210 1220 1230 1240 1250 1260
pF1KE5 NKDLTQD
:::::::
XP_016 NKDLTQD
1270
>>NP_060414 (OMIM: 614460) ubiquitin carboxyl-terminal h (1287 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1315.2 bits: 252.6 E(85289): 1.6e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1131-1287)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
NP_060 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
1110 1120 1130 1140 1150 1160
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
1170 1180 1190 1200 1210 1220
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
1230 1240 1250 1260 1270 1280
pF1KE5 NKDLTQD
:::::::
NP_060 NKDLTQD
>>NP_001269588 (OMIM: 614460) ubiquitin carboxyl-termina (1355 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1314.9 bits: 252.6 E(85289): 1.7e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1199-1355)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
NP_001 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
1170 1180 1190 1200 1210 1220
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
1230 1240 1250 1260 1270 1280
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
1290 1300 1310 1320 1330 1340
pF1KE5 NKDLTQD
:::::::
NP_001 NKDLTQD
1350
>>NP_001317137 (OMIM: 614460) ubiquitin carboxyl-termina (1375 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1314.8 bits: 252.6 E(85289): 1.7e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1219-1375)
10 20 30
pF1KE5 MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
::::::::::::::::::::::::::::::
NP_001 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
1190 1200 1210 1220 1230 1240
40 50 60 70 80 90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
1250 1260 1270 1280 1290 1300
100 110 120 130 140 150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
1310 1320 1330 1340 1350 1360
pF1KE5 NKDLTQD
:::::::
NP_001 NKDLTQD
1370
157 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:14:54 2016 done: Mon Nov 7 22:14:54 2016
Total Scan time: 4.920 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]