FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5169, 157 aa
  1>>>pF1KE5169 157 - 157 aa - 157 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2764+/-0.000676; mu= 12.4884+/- 0.041
 mean_var=64.4230+/-12.828, 0's: 0 Z-trim(109.4): 9  B-trim: 0 in 0/51
 Lambda= 0.159792
 statistics sampled from 10879 (10883) to 10879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS41619.1 USP47 gene_id:55031|Hs108|chr11        (1287) 1044 249.1 6.7e-66
CCDS60725.1 USP47 gene_id:55031|Hs108|chr11        (1355) 1044 249.1   7e-66
CCDS81554.1 USP47 gene_id:55031|Hs108|chr11        (1375) 1044 249.1 7.1e-66


>>CCDS41619.1 USP47 gene_id:55031|Hs108|chr11             (1287 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1296.6  bits: 249.1 E(32554): 6.7e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1131-1287)

                                             10        20        30
pF1KE5                               MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
                                     ::::::::::::::::::::::::::::::
CCDS41 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
             1110      1120      1130      1140      1150      1160

               40        50        60        70        80        90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
             1170      1180      1190      1200      1210      1220

              100       110       120       130       140       150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
             1230      1240      1250      1260      1270      1280

              
pF1KE5 NKDLTQD
       :::::::
CCDS41 NKDLTQD
              

>>CCDS60725.1 USP47 gene_id:55031|Hs108|chr11             (1355 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1296.3  bits: 249.1 E(32554): 7e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1199-1355)

                                             10        20        30
pF1KE5                               MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
                                     ::::::::::::::::::::::::::::::
CCDS60 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
     1170      1180      1190      1200      1210      1220        

               40        50        60        70        80        90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
     1230      1240      1250      1260      1270      1280        

              100       110       120       130       140       150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
     1290      1300      1310      1320      1330      1340        

              
pF1KE5 NKDLTQD
       :::::::
CCDS60 NKDLTQD
     1350     

>>CCDS81554.1 USP47 gene_id:55031|Hs108|chr11             (1375 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1296.2  bits: 249.1 E(32554): 7.1e-66
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1219-1375)

                                             10        20        30
pF1KE5                               MKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
                                     ::::::::::::::::::::::::::::::
CCDS81 VFLDYHIYEEDINISSNWEVFLEVLDGVEKMKSMSQLAVLSRRWKPSEMKLDPFQEVVLE
     1190      1200      1210      1220      1230      1240        

               40        50        60        70        80        90
pF1KE5 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SSSVDELREKLSEISGIPLDDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYI
     1250      1260      1270      1280      1290      1300        

              100       110       120       130       140       150
pF1KE5 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 CDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAP
     1310      1320      1330      1340      1350      1360        

              
pF1KE5 NKDLTQD
       :::::::
CCDS81 NKDLTQD
     1370     




157 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:14:53 2016 done: Mon Nov  7 22:14:53 2016
 Total Scan time:  1.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]