Result of FASTA (omim) for
pFN21AE5163
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5163, 144 aa
1>>>pF1KE5163 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8530+/-0.000364; mu= 4.9812+/- 0.023
mean_var=112.8390+/-22.145, 0's: 0 Z-trim(116.5): 34 B-trim: 224 in 1/58
Lambda= 0.120738
statistics sampled from 27601 (27635) to 27601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.324), width: 16
Scan time: 4.880
The best scores are: opt bits E(85289)
NP_001003396 (OMIM: 604069) tumor protein D53 isof ( 144) 900 166.8 1.1e-41
XP_006715620 (OMIM: 604069) PREDICTED: tumor prote ( 166) 887 164.5 6e-41
XP_016866726 (OMIM: 604069) PREDICTED: tumor prote ( 176) 887 164.6 6.3e-41
NP_003278 (OMIM: 604069) tumor protein D53 isoform ( 204) 887 164.6 7.1e-41
NP_001305832 (OMIM: 604069) tumor protein D53 isof ( 209) 862 160.2 1.5e-39
XP_016866727 (OMIM: 604069) PREDICTED: tumor prote ( 163) 798 149.0 2.7e-36
NP_001003397 (OMIM: 604069) tumor protein D53 isof ( 131) 796 148.6 2.9e-36
NP_001287923 (OMIM: 604069) tumor protein D53 isof ( 191) 798 149.1 3.1e-36
XP_016866728 (OMIM: 604069) PREDICTED: tumor prote ( 115) 720 135.4 2.5e-32
NP_001003395 (OMIM: 604069) tumor protein D53 isof ( 175) 707 133.2 1.7e-31
XP_005267179 (OMIM: 604069) PREDICTED: tumor prote ( 175) 707 133.2 1.7e-31
XP_016866729 (OMIM: 604069) PREDICTED: tumor prote ( 102) 616 117.2 6.5e-27
NP_001305836 (OMIM: 604069) tumor protein D53 isof ( 102) 616 117.2 6.5e-27
NP_001278955 (OMIM: 604069) tumor protein D53 isof ( 102) 616 117.2 6.5e-27
NP_001274071 (OMIM: 604068) tumor protein D52 isof ( 238) 515 99.8 2.6e-21
NP_955395 (OMIM: 603747) tumor protein D54 isoform ( 200) 509 98.7 4.6e-21
NP_001020424 (OMIM: 604068) tumor protein D52 isof ( 207) 474 92.7 3.3e-19
NP_001274073 (OMIM: 604068) tumor protein D52 isof ( 145) 467 91.3 5.7e-19
NP_005070 (OMIM: 604068) tumor protein D52 isoform ( 184) 467 91.4 6.9e-19
NP_001274072 (OMIM: 604068) tumor protein D52 isof ( 233) 465 91.1 1.1e-18
NP_001274069 (OMIM: 604068) tumor protein D52 isof ( 247) 465 91.1 1.1e-18
NP_001020423 (OMIM: 604068) tumor protein D52 isof ( 224) 458 89.9 2.4e-18
XP_016883527 (OMIM: 603747) PREDICTED: tumor prote ( 189) 444 87.4 1.1e-17
NP_955393 (OMIM: 603747) tumor protein D54 isoform ( 209) 444 87.4 1.2e-17
NP_955391 (OMIM: 603747) tumor protein D54 isoform ( 186) 432 85.3 4.8e-17
NP_001230821 (OMIM: 603747) tumor protein D54 isof ( 163) 429 84.8 6.1e-17
XP_011527337 (OMIM: 603747) PREDICTED: tumor prote ( 186) 310 64.1 1.2e-10
NP_003279 (OMIM: 603747) tumor protein D54 isoform ( 206) 310 64.1 1.3e-10
XP_011527336 (OMIM: 603747) PREDICTED: tumor prote ( 209) 310 64.1 1.3e-10
NP_955394 (OMIM: 603747) tumor protein D54 isoform ( 220) 310 64.1 1.4e-10
NP_001230824 (OMIM: 603747) tumor protein D54 isof ( 222) 310 64.1 1.4e-10
NP_955392 (OMIM: 603747) tumor protein D54 isoform ( 229) 310 64.1 1.4e-10
NP_001230823 (OMIM: 603747) tumor protein D54 isof ( 152) 280 58.8 3.8e-09
NP_001230820 (OMIM: 603747) tumor protein D54 isof ( 181) 250 53.6 1.6e-07
>>NP_001003396 (OMIM: 604069) tumor protein D53 isoform (144 aa)
initn: 900 init1: 900 opt: 900 Z-score: 869.3 bits: 166.8 E(85289): 1.1e-41
Smith-Waterman score: 900; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::::
NP_001 ISKKFGDMSYSIRHSISMPAMRRK
130 140
>>XP_006715620 (OMIM: 604069) PREDICTED: tumor protein D (166 aa)
initn: 887 init1: 887 opt: 887 Z-score: 856.1 bits: 164.5 E(85289): 6e-41
Smith-Waterman score: 887; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::
XP_006 ISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKVQMK
130 140 150 160
>>XP_016866726 (OMIM: 604069) PREDICTED: tumor protein D (176 aa)
initn: 887 init1: 887 opt: 887 Z-score: 855.8 bits: 164.6 E(85289): 6.3e-41
Smith-Waterman score: 887; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::
XP_016 ISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKVFFRRRRYEEAKEE
130 140 150 160 170
>>NP_003278 (OMIM: 604069) tumor protein D53 isoform 1 [ (204 aa)
initn: 887 init1: 887 opt: 887 Z-score: 854.8 bits: 164.6 E(85289): 7.1e-41
Smith-Waterman score: 887; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::
NP_003 ISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSFEEVLS
130 140 150 160 170 180
>>NP_001305832 (OMIM: 604069) tumor protein D53 isoform (209 aa)
initn: 796 init1: 796 opt: 862 Z-score: 831.1 bits: 160.2 E(85289): 1.5e-39
Smith-Waterman score: 862; 95.9% identity (96.6% similar) in 147 aa overlap (1-142:1-147)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDM-----SYSIRHSISMPAMRRK
:::::::: .:::::::::::::
NP_001 ISKKFGDMRSHSIGYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSF
130 140 150 160 170 180
>>XP_016866727 (OMIM: 604069) PREDICTED: tumor protein D (163 aa)
initn: 798 init1: 798 opt: 798 Z-score: 772.5 bits: 149.0 E(85289): 2.7e-36
Smith-Waterman score: 798; 98.5% identity (98.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
:::::::: :
XP_016 ISKKFGDMRNSPTFKSFEERVETTVTSLKVFFRRRRYEEAKEE
130 140 150 160
>>NP_001003397 (OMIM: 604069) tumor protein D53 isoform (131 aa)
initn: 796 init1: 796 opt: 796 Z-score: 772.0 bits: 148.6 E(85289): 2.9e-36
Smith-Waterman score: 796; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::
NP_001 ISKKFGDMRRK
130
>>NP_001287923 (OMIM: 604069) tumor protein D53 isoform (191 aa)
initn: 798 init1: 798 opt: 798 Z-score: 771.4 bits: 149.1 E(85289): 3.1e-36
Smith-Waterman score: 798; 98.5% identity (98.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
70 80 90 100 110 120
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
:::::::: :
NP_001 ISKKFGDMRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSFEEVLSSTAHASAQSLAGG
130 140 150 160 170 180
>>XP_016866728 (OMIM: 604069) PREDICTED: tumor protein D (115 aa)
initn: 720 init1: 720 opt: 720 Z-score: 701.3 bits: 135.4 E(85289): 2.5e-32
Smith-Waterman score: 720; 100.0% identity (100.0% similar) in 115 aa overlap (30-144:1-115)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
:::::::::::::::::::::::::::::::
XP_016 MLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
40 50 60 70 80 90
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::::
XP_016 ISKKFGDMSYSIRHSISMPAMRRK
100 110
>>NP_001003395 (OMIM: 604069) tumor protein D53 isoform (175 aa)
initn: 707 init1: 707 opt: 707 Z-score: 686.3 bits: 133.2 E(85289): 1.7e-31
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 113 aa overlap (30-142:1-113)
10 20 30 40 50 60
pF1KE5 MEAQAQGLLETEPLQGTDEDAVASADFSSMLSEEEKEELKAELVQLEDEITTLRQVLSAK
:::::::::::::::::::::::::::::::
NP_001 MLSEEEKEELKAELVQLEDEITTLRQVLSAK
10 20 30
70 80 90 100 110 120
pF1KE5 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTA
40 50 60 70 80 90
130 140
pF1KE5 ISKKFGDMSYSIRHSISMPAMRRK
::::::::::::::::::::::
NP_001 ISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKTKVGGTNPNGGSFEEVLS
100 110 120 130 140 150
144 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:11:43 2016 done: Mon Nov 7 22:11:44 2016
Total Scan time: 4.880 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]