FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5161, 134 aa
  1>>>pF1KE5161 134 - 134 aa - 134 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1888+/-0.000257; mu= 12.9957+/- 0.016
 mean_var=74.9148+/-15.193, 0's: 0 Z-trim(121.9): 12  B-trim: 1381 in 2/56
 Lambda= 0.148180
 statistics sampled from 39186 (39210) to 39186 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.46), width:  16
 Scan time:  5.140

The best scores are:                                      opt bits E(85289)
NP_002512 (OMIM: 600295) natriuretic peptides B pr ( 134)  895 199.2 1.7e-51


>>NP_002512 (OMIM: 600295) natriuretic peptides B prepro  (134 aa)
 initn: 895 init1: 895 opt: 895  Z-score: 1045.7  bits: 199.2 E(85289): 1.7e-51
Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KE5 MDPQTAPSRALLLLLFLHLAFLGGRSHPLGSPGSASDLETSGLQEQRNHLQGKLSELQVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDPQTAPSRALLLLLFLHLAFLGGRSHPLGSPGSASDLETSGLQEQRNHLQGKLSELQVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QTSLEPLQESPRPTGVWKSREVATEGIRGHRKMVLYTLRAPRSPKMVQGSGCFGRKMDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QTSLEPLQESPRPTGVWKSREVATEGIRGHRKMVLYTLRAPRSPKMVQGSGCFGRKMDRI
               70        80        90       100       110       120

              130    
pF1KE5 SSSSGLGCKVLRRH
       ::::::::::::::
NP_002 SSSSGLGCKVLRRH
              130    




134 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:10:35 2016 done: Mon Nov  7 22:10:36 2016
 Total Scan time:  5.140 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]