FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5161, 134 aa
  1>>>pF1KE5161 134 - 134 aa - 134 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2409+/-0.00054; mu= 12.5951+/- 0.033
 mean_var=71.7776+/-14.211, 0's: 0 Z-trim(114.9): 8  B-trim: 312 in 1/51
 Lambda= 0.151384
 statistics sampled from 15418 (15426) to 15418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.474), width:  16
 Scan time:  1.960

The best scores are:                                      opt bits E(32554)
CCDS140.1 NPPB gene_id:4879|Hs108|chr1             ( 134)  895 203.2 4.1e-53


>>CCDS140.1 NPPB gene_id:4879|Hs108|chr1                  (134 aa)
 initn: 895 init1: 895 opt: 895  Z-score: 1067.1  bits: 203.2 E(32554): 4.1e-53
Smith-Waterman score: 895; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KE5 MDPQTAPSRALLLLLFLHLAFLGGRSHPLGSPGSASDLETSGLQEQRNHLQGKLSELQVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDPQTAPSRALLLLLFLHLAFLGGRSHPLGSPGSASDLETSGLQEQRNHLQGKLSELQVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 QTSLEPLQESPRPTGVWKSREVATEGIRGHRKMVLYTLRAPRSPKMVQGSGCFGRKMDRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QTSLEPLQESPRPTGVWKSREVATEGIRGHRKMVLYTLRAPRSPKMVQGSGCFGRKMDRI
               70        80        90       100       110       120

              130    
pF1KE5 SSSSGLGCKVLRRH
       ::::::::::::::
CCDS14 SSSSGLGCKVLRRH
              130    




134 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:10:34 2016 done: Mon Nov  7 22:10:35 2016
 Total Scan time:  1.960 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]