FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5157, 126 aa
  1>>>pF1KE5157 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9867+/-0.000264; mu= 13.2242+/- 0.017
 mean_var=57.8382+/-11.733, 0's: 0 Z-trim(120.7): 5  B-trim: 2304 in 2/49
 Lambda= 0.168642
 statistics sampled from 36181 (36186) to 36181 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.424), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(85289)
NP_001288763 (OMIM: 218340,615140) protein C10 iso ( 126)  809 203.8 6.2e-53
NP_612434 (OMIM: 218340,615140) protein C10 isofor ( 126)  809 203.8 6.2e-53
NP_001288765 (OMIM: 218340,615140) protein C10 iso ( 113)  707 178.9 1.7e-45
NP_001288767 (OMIM: 218340,615140) protein C10 iso (  91)  605 154.1 4.1e-38
NP_001288766 (OMIM: 218340,615140) protein C10 iso (  97)  337 88.9 1.8e-18


>>NP_001288763 (OMIM: 218340,615140) protein C10 isoform  (126 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 1071.3  bits: 203.8 E(85289): 6.2e-53
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
               70        80        90       100       110       120

             
pF1KE5 GSVAAS
       ::::::
NP_001 GSVAAS
             

>>NP_612434 (OMIM: 218340,615140) protein C10 isoform 1   (126 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 1071.3  bits: 203.8 E(85289): 6.2e-53
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
               70        80        90       100       110       120

             
pF1KE5 GSVAAS
       ::::::
NP_612 GSVAAS
             

>>NP_001288765 (OMIM: 218340,615140) protein C10 isoform  (113 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 937.9  bits: 178.9 E(85289): 1.7e-45
Smith-Waterman score: 707; 99.1% identity (100.0% similar) in 109 aa overlap (18-126:5-113)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
                        .::::::::::::::::::::::::::::::::::::::::::
NP_001              MNDLMVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
                            10        20        30        40       

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
        50        60        70        80        90       100       

             
pF1KE5 GSVAAS
       ::::::
NP_001 GSVAAS
       110   

>>NP_001288767 (OMIM: 218340,615140) protein C10 isoform  (91 aa)
 initn: 605 init1: 605 opt: 605  Z-score: 805.2  bits: 154.1 E(85289): 4.1e-38
Smith-Waterman score: 605; 100.0% identity (100.0% similar) in 91 aa overlap (36-126:1-91)

          10        20        30        40        50        60     
pF1KE5 TQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQIQQEV
                                     ::::::::::::::::::::::::::::::
NP_001                               MDEARDNACNDMGKMLQFVLPVATQIQQEV
                                             10        20        30

          70        80        90       100       110       120     
pF1KE5 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAGGSVAA
               40        50        60        70        80        90

        
pF1KE5 S
       :
NP_001 S
        

>>NP_001288766 (OMIM: 218340,615140) protein C10 isoform  (97 aa)
 initn: 337 init1: 337 opt: 337  Z-score: 452.4  bits: 88.9 E(85289): 1.8e-18
Smith-Waterman score: 548; 77.0% identity (77.0% similar) in 126 aa overlap (1-126:1-97)

               10        20        30        40        50        60
pF1KE5 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMGKMLQFVLPVATQ
       ::::::::::::::::::::::::::::::::::::::::::::::::            
NP_001 MASASTQPAALSAEQAKVVLAEVIQAFSAPENAVRMDEARDNACNDMG------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE5 IQQEVIKAYGFSCDGEGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
                        :::::::::::::::::::::::::::::::::::::::::::
NP_001 -----------------VLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTLPPHGPAAG
                        50        60        70        80        90 

             
pF1KE5 GSVAAS
       ::::::
NP_001 GSVAAS
             




126 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:08:25 2016 done: Mon Nov  7 22:08:26 2016
 Total Scan time:  4.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]