FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5151, 86 aa
  1>>>pF1KE5151 86 - 86 aa - 86 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7556+/-0.000682; mu= 10.4159+/- 0.041
 mean_var=47.1871+/- 9.522, 0's: 0 Z-trim(107.5): 4  B-trim: 689 in 2/51
 Lambda= 0.186708
 statistics sampled from 9588 (9590) to 9588 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.295), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS1546.1 SRP9 gene_id:6726|Hs108|chr1            (  86)  565 159.1   3e-40
CCDS44323.1 SRP9 gene_id:6726|Hs108|chr1           (  82)  322 93.7 1.5e-20


>>CCDS1546.1 SRP9 gene_id:6726|Hs108|chr1                 (86 aa)
 initn: 565 init1: 565 opt: 565  Z-score: 836.0  bits: 159.1 E(32554): 3e-40
Smith-Waterman score: 565; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVK
               10        20        30        40        50        60

               70        80      
pF1KE5 KIEKFHSQLMRLMVAKEARNVTMETE
       ::::::::::::::::::::::::::
CCDS15 KIEKFHSQLMRLMVAKEARNVTMETE
               70        80      

>>CCDS44323.1 SRP9 gene_id:6726|Hs108|chr1                (82 aa)
 initn: 324 init1: 318 opt: 322  Z-score: 482.6  bits: 93.7 E(32554): 1.5e-20
Smith-Waterman score: 322; 96.1% identity (96.1% similar) in 51 aa overlap (1-49:1-51)

               10        20        30        40          50        
pF1KE5 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLV--CLVYKTDQAQD
       :::::::::::::::::::::::::::::::::::::::::::::::  ::         
CCDS44 MPQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVRQCLALLLRLQCS
               10        20        30        40        50        60

       60        70        80      
pF1KE5 VKKIEKFHSQLMRLMVAKEARNVTMETE
                                   
CCDS44 GMIIAHCILDLLGSSGPLASAS      
               70        80        




86 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:00:23 2016 done: Mon Nov  7 22:00:24 2016
 Total Scan time:  1.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]