FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5150, 86 aa
  1>>>pF1KE5150 86 - 86 aa - 86 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6279+/-0.000511; mu= 10.8714+/- 0.031
 mean_var=44.0252+/- 8.759, 0's: 0 Z-trim(111.8): 20  B-trim: 0 in 0/51
 Lambda= 0.193296
 statistics sampled from 12648 (12665) to 12648 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.389), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12          (  86)  578 167.5 9.4e-43
CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4           (  80)  238 72.6 3.1e-14


>>CCDS9055.1 SNRPF gene_id:6636|Hs108|chr12               (86 aa)
 initn: 578 init1: 578 opt: 578  Z-score: 881.0  bits: 167.5 E(32554): 9.4e-43
Smith-Waterman score: 578; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE5 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG
               10        20        30        40        50        60

               70        80      
pF1KE5 EVLIRCNNVLYIRGVEEEEEDGEMRE
       ::::::::::::::::::::::::::
CCDS90 EVLIRCNNVLYIRGVEEEEEDGEMRE
               70        80      

>>CCDS3767.1 LSM6 gene_id:11157|Hs108|chr4                (80 aa)
 initn: 236 init1: 236 opt: 238  Z-score: 369.1  bits: 72.6 E(32554): 3.1e-14
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-72:1-73)

                10        20        30        40        50         
pF1KE5 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
       :::   .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :... 
CCDS37 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
               10        20        30        40        50        60

      60        70        80      
pF1KE5 GEVLIRCNNVLYIRGVEEEEEDGEMRE
       :...:: ::::::              
CCDS37 GDAFIRGNNVLYISTQKRRM       
               70        80       




86 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:59:48 2016 done: Mon Nov  7 21:59:48 2016
 Total Scan time:  1.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]