FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5148, 64 aa
  1>>>pF1KE5148 64 - 64 aa - 64 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1579+/-0.000431; mu= 11.5959+/- 0.026
 mean_var=41.1537+/- 8.173, 0's: 0 Z-trim(115.1): 17  B-trim: 15 in 1/50
 Lambda= 0.199926
 statistics sampled from 15653 (15670) to 15653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.481), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS8385.1 FXYD2 gene_id:486|Hs108|chr11           (  64)  449 135.1 2.9e-33
CCDS8386.1 FXYD2 gene_id:486|Hs108|chr11           (  66)  399 120.6 6.6e-29
CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11    ( 144)  399 120.8 1.3e-28
CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19         (  92)  194 61.6 5.5e-11


>>CCDS8385.1 FXYD2 gene_id:486|Hs108|chr11                (64 aa)
 initn: 449 init1: 449 opt: 449  Z-score: 710.6  bits: 135.1 E(32554): 2.9e-33
Smith-Waterman score: 449; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64)

               10        20        30        40        50        60
pF1KE5 MDRWYLGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MDRWYLGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQIN
               10        20        30        40        50        60

           
pF1KE5 EDEP
       ::::
CCDS83 EDEP
           

>>CCDS8386.1 FXYD2 gene_id:486|Hs108|chr11                (66 aa)
 initn: 399 init1: 399 opt: 399  Z-score: 632.4  bits: 120.6 E(32554): 6.6e-29
Smith-Waterman score: 399; 100.0% identity (100.0% similar) in 58 aa overlap (7-64:9-66)

                 10        20        30        40        50        
pF1KE5   MDRWYLGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQ
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MTGLSMDGGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGLLILLSRRFRCGGNKKRRQ
               10        20        30        40        50        60

       60    
pF1KE5 INEDEP
       ::::::
CCDS83 INEDEP
             

>>CCDS73400.1 FXYD2 gene_id:100533181|Hs108|chr11         (144 aa)
 initn: 399 init1: 399 opt: 399  Z-score: 627.4  bits: 120.8 E(32554): 1.3e-28
Smith-Waterman score: 399; 100.0% identity (100.0% similar) in 58 aa overlap (7-64:87-144)

                                       10        20        30      
pF1KE5                         MDRWYLGGSPKGDVDPFYYDYETVRNGGLIFAGLAF
                                     ::::::::::::::::::::::::::::::
CCDS73 LSRRCKCSFNQKPRNRAPESRELKCSHQVEGGSPKGDVDPFYYDYETVRNGGLIFAGLAF
         60        70        80        90       100       110      

         40        50        60    
pF1KE5 IVGLLILLSRRFRCGGNKKRRQINEDEP
       ::::::::::::::::::::::::::::
CCDS73 IVGLLILLSRRFRCGGNKKRRQINEDEP
        120       130       140    

>>CCDS12445.1 FXYD1 gene_id:5348|Hs108|chr19              (92 aa)
 initn: 187 init1: 187 opt: 194  Z-score: 310.7  bits: 61.6 E(32554): 5.5e-11
Smith-Waterman score: 194; 52.7% identity (80.0% similar) in 55 aa overlap (9-63:22-75)

                            10        20        30        40       
pF1KE5              MDRWYLGGSPKGDVDPFYYDYETVRNGGLIFAGLAFIVGLLILLSRR
                            ::: . ::: :::.... :::..::. ::.:.::.::::
CCDS12 MASLGHILVFCVGLLTMAKAESPK-EHDPFTYDYQSLQIGGLVIAGILFILGILIVLSRR
               10        20         30        40        50         

        50        60                    
pF1KE5 FRCGGNKKRRQINEDEP                
        ::  :...:  . ::                 
CCDS12 CRCKFNQQQRTGEPDEEEGTFRSSIRRLSTRRR
      60        70        80        90  




64 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:59:09 2016 done: Mon Nov  7 21:59:09 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]